Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00836 ATGTGTGGTGCTAGAGCAATCTTGGCAATGTCATTGCTACTAGTGACCTTACAAGTTCTCAATGTCTCATCATGTCCTCCTTCTGAATGGGCAGCACTCATGTCCTTCAAAGCAGCTCTTAATGAACCTTACTTTGGAATCTTCCATTCATGGAGAGGTACCAATTGTTGCTACAATTGGTACGGCATCAGCTGTGACCCGACCTCACGTCGGGTGGCAGAGATCACACTCCGTGGCCTCACCGTGGGAGACAACCACCGCCGCTACAAACACACCGAAACCACGAGTGGATACATGACTGGACACATCTCTCGATCAATTTGCAACCTCACCCAGCTCTCTAGTATCACTATCTCCGACTGGAAGGGTATTTCGGGAAATATCCCTGAGTGCATCACGACACTAAATTTTCTCCAAATTATAGATCTCTCGGGAAACATGATTTCCGAAAAGATTCCATATGATATAGGGCATCTTACTCAGCTTATGATGCTCAATCTCGCAGATAATCATATCTCAAACAGGATTCCAGCTACACTTGTAAACCTCGTTAACTTAAAGCAACTTGATCTTCGCAACAATGCCATAGAAGGCCCCATTCCCAGGAACATCGGCCGGCTCAGAAAGCTGAACCGAGCGTTACTAAGTCACAATAGAATAAACGGTCGAATTCCACGATCCTTTTCAAATATATATGGGCTAGCAGATATAGACATGTCACTGAACCAGTTATCTGGTCCAATTCCGTTTTCATTAGGACAAATGTCGGTTCTGGACTCGCTGAACCTGAAGTATAACAACTTGAGCGGGAGGATTCCGAGGACTTTGTTGGCATCTAGAATGAGCCATTTGGATTTGAGTAGAAATGCTTTGAGGGGACCTATACCAGATGTGTTTAGTGAAATCTCATATTTCATAAACATTGATCTGTCACATAACAAGTTGAACGGTTTGATTCCTAAGTCAATGGCGTTAGCCACTTACATTGGTCATGTCGACTTTAGTCACAACCACGGAATTGTTCCAACACAATGGACGCCTTTCCGGCCAGCCACTTCAACCATGCACTCATAG 1074 0.4451 MCGARAILAMSLLLVTLQVLNVSSCPPSEWAALMSFKAALNEPYFGIFHSWRGTNCCYNWYGISCDPTSRRVAEITLRGLTVGDNHRRYKHTETTSGYMTGHISRSICNLTQLSSITISDWKGISGNIPECITTLNFLQIIDLSGNMISEKIPYDIGHLTQLMMLNLADNHISNRIPATLVNLVNLKQLDLRNNAIEGPIPRNIGRLRKLNRALLSHNRINGRIPRSFSNIYGLADIDMSLNQLSGPIPFSLGQMSVLDSLNLKYNNLSGRIPRTLLASRMSHLDLSRNALRGPIPDVFSEISYFINIDLSHNKLNGLIPKSMALATYIGHVDFSHNHGIVPTQWTPFRPATSTMHS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00836 357 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vifa6g00836 357 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 155 256 - -
Vifa6g00836 357 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 201 294 - -
Vifa6g00836 357 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515
Vifa6g00836 357 SUPERFAMILY L domain-like 24 339 - -
Vifa6g00836 357 Gene3D Ribonuclease Inhibitor 23 346 IPR032675 -
Vifa6g00836 357 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 104 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00836 Vifa-Chr6 286906911 286907984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00836 91 349 Receptor kinase-like Gene Family AT3G11080 26.557 5.71e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00836 - - gmx:100778852 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00964 1 161306000 161307118 Vifa6g00836 6 286906911 286907984 PCT