Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00964 ATGAGTAGCATTAAGCTTTTCCAAGCAACAACAGTTACAGTACTGATATTAATACTATTACTCACCACCGCCGTCCACTCATGTCCACCGTCAGACAGGGCGGCGCTACTAGCCTTCAAAGCGGCTCTCCAGGATCCCTACCTCGGCATCTTCAACTCATGGACCGGCACCGACTGTTGCCACAAATGGTACGGCGTGAGCTGCGACAGAGGCTCCCGCCGCGTCGCCGACATCAACCTCCGCGGCGAGTCAGAAGATCCCATCTTCGAAAAAGCTCACCGCACCGGCTACATGACCGGTTACATCTCACCAGCCATCTGCAAACTCAACCGTCTCTCAAGCATAACCGTCGCCGACTGGAAAAACATCTCCGGCGAAATCCCCCGCTGTATAACCTCCCTCCCTTTCCTCCGCATCATTGACCTCATCGGAAACCGCATCTCCGGACCTATCCCCTACGACATCGGCAGACTCCAGCGTCTCACCGTTCTGAACATCGCCGATAACACCATCTCCGGCAACCTCCCACCGTCGTTAACCAACCTAAGAAGCCTAATGCACCTCGACATCCGTAACAACCAGATCACCGGCCCTATACCTTCAGACATCGGCAGGCTTCCAATGCTGAGCAGGGCTTTACTTAGCGGTAACAAAATCAGCGGGCCGATACCCGAATCAATCGCTCATATCTACCGTCTCGCAGATCTCGATCTATCTCGAAACCAAGTTTCCGGGCCCATACCGGAATCATTAGGAATAAGTGATTTAAATTTAAGCAGAAACAGTTTGGAAGGTAATATACCTGATGTGTTTGGTGTGAGATCTTATTTCACGGTTTTGGATTTGTCTTATAATAGACTTAAAGGGAGTATTCCGAAATCTATGGCTTCTGCTTCTTATATTGGGCATTTGGATTTGAGTTATAACCATTTGTGTGGGAAGATTCCTGATGGAGTTCCTTTTGATCATTTGGAGGCTTCTTCTTTTGTTTACAATGATTGTCTTTGTGGGAAGCCACTTAAAGCTTGTGTTAACTAA 1038 0.4875 MSSIKLFQATTVTVLILILLLTTAVHSCPPSDRAALLAFKAALQDPYLGIFNSWTGTDCCHKWYGVSCDRGSRRVADINLRGESEDPIFEKAHRTGYMTGYISPAICKLNRLSSITVADWKNISGEIPRCITSLPFLRIIDLIGNRISGPIPYDIGRLQRLTVLNIADNTISGNLPPSLTNLRSLMHLDIRNNQITGPIPSDIGRLPMLSRALLSGNKISGPIPESIAHIYRLADLDLSRNQVSGPIPESLGISDLNLSRNSLEGNIPDVFGVRSYFTVLDLSYNRLKGSIPKSMASASYIGHLDLSYNHLCGKIPDGVPFDHLEASSFVYNDCLCGKPLKACVN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00964 345 Gene3D Ribonuclease Inhibitor 95 345 IPR032675 -
Vifa1g00964 345 Gene3D Ribonuclease Inhibitor 25 94 IPR032675 -
Vifa1g00964 345 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 2 117 - -
Vifa1g00964 345 Pfam Leucine Rich repeat 183 197 IPR001611 GO:0005515
Vifa1g00964 345 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 154 247 - -
Vifa1g00964 345 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Vifa1g00964 345 SUPERFAMILY L domain-like 27 341 - -
Vifa1g00964 345 FunFam Leucine-rich repeat receptor-like kinase 32 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00964 Vifa-Chr1 161306000 161307118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00964 98 344 Receptor kinase-like Gene Family AT5G46330 37.597 6.80e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00964 - - gmx:100804739 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00964 1 161306000 161307118 Vifa1g00964 1 161306000 161307118 ECH
Vifa1g00964 1 161306000 161307118 Vifa6g00836 6 286906911 286907984 PCT