Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00748 ATGGGTCAAGGTCTTAGTTGCAGAGGGAGTCATGAACATGGACTCTTTCGTGCTGTCCAACATGGTCATCTTCAAACTGTTGTTACTTTGTTGAAGACACATCCTTCTCTTATTCATCGTACCACTGTTTATGACCACCATTCTCCTCTTCATATTGCTGCTGCCAATGGTCAGATCCAGGTTTTATCTAGGCTTTTGGATGGATCTGCAAATCCAGATGTGTTGAATCGGCAAAAGCAGACCCCGCTTATGTTGGCAGCGATGCATGGAAAAATTGATTGTGTGGAAAAGCTACTGGAAGCTGGTGCTAATGTTTTAATGTTTGATGTGTGTCATGGAAGAACTTGTTTGCACTATGCTGCTTACTATGGTCATTCTTCTTGTCTTAAAGCGATACTTTCGGCTGCTCAAACTAGTCCGGTCGCTGCTTCTTGGGGGTTTTCGCGGTTTGTGAATATTAGAGACGGTAGGGGCGCTACACCATTGCATTTAGCAGCTCGTCAAAGACGGTCTGAATGTGTGCATGCTTTGTTGTGTAGTGGAGCTCTTGTTTCTGCTTCAACCAGCAGATATGGATGTCCCGGGAGCACTCCTCTTCATCTAGCAGCTAAAGGAGGATCTTTGGATTGCATCCGTGAACTATTAGCTTGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGTATACCGTATGTGGTTGCTCTGAAGTACAAACATGGAGCATGTGCAGCATTGCTAAATCTTTCATCTGCGCAGCCTCTTGTCTGGCCGTCGTCATTGAAAATTATCAGCGAGCTCAATCCGGAGGCTAAAACTTTATTAGAGCAGGCCTTGATGGACGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGAAGTCCTTACTCGCTTCCGTCTCCATCACACCCTGATCCGATTGATGACAATATCTCTGAGGTTAGTGAGACGGAACTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAAACTGTGGCCACCAAATGTGTGCACAATGCACACTAACACTCTGTTGTCACAACAAGCCCAACACATCGACTTCTCAACCAACCCCACCCGTCTGTCCATTCTGTCGAAGCGCCATATCTAAACTGACGGTCATCAAGATAGAAACTCACAAAGACATCGACCTAGACGCTACACCTGATGCCACTTGTTTCAAGCCAAGCAAGTCAAGAAAATACCGTAACATGATCGAAGGCTGCAGCAGCAGTTTCAAGGGAATGTCCAATGTAAACTCATACGGAAAAATAAACGGCCGTATGATAAGCCACAATGATGGTCCTCCTGCTGCTGCTGATATTGAGAAGTATATCATATATGAATCATGA 1362 0.4523 MGQGLSCRGSHEHGLFRAVQHGHLQTVVTLLKTHPSLIHRTTVYDHHSPLHIAAANGQIQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQTSPVAASWGFSRFVNIRDGRGATPLHLAARQRRSECVHALLCSGALVSASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKYKHGACAALLNLSSAQPLVWPSSLKIISELNPEAKTLLEQALMDANREREKNILKGSPYSLPSPSHPDPIDDNISEVSETELCCICFEQVCTIEVQNCGHQMCAQCTLTLCCHNKPNTSTSQPTPPVCPFCRSAISKLTVIKIETHKDIDLDATPDATCFKPSKSRKYRNMIEGCSSSFKGMSNVNSYGKINGRMISHNDGPPAAADIEKYIIYES 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00748 453 Gene3D - 9 142 IPR036770 -
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Vifa6g00748 453 SMART ANK_2a 112 142 IPR002110 GO:0005515
Vifa6g00748 453 SMART ANK_2a 10 40 IPR002110 GO:0005515
Vifa6g00748 453 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vifa6g00748 453 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vifa6g00748 453 SMART ANK_2a 45 74 IPR002110 GO:0005515
Vifa6g00748 453 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Vifa6g00748 453 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Vifa6g00748 453 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Vifa6g00748 453 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Vifa6g00748 453 Gene3D - 143 197 IPR036770 -
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Vifa6g00748 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 389 IPR013083 -
Vifa6g00748 453 SUPERFAMILY Ankyrin repeat 14 247 IPR036770 -
Vifa6g00748 453 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 81 240 - -
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Vifa6g00748 453 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Vifa6g00748 453 SUPERFAMILY RING/U-box 314 375 - -
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vifa6g00748 453 Gene3D - 198 252 IPR036770 -
Vifa6g00748 453 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00748 Vifa-Chr6 266157829 266159856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00748 36 237 Miscellaneous Gene Families AT5G02620 28.095 6.62e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00748 - - gmx:100800611 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01119 1 183251408 183253504 Vifa6g00748 6 266157829 266159856 PCT