Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01119 ATGGGTCAAAACCTTAGTTGCAGAGGTTCCAACCATGATCATGGTCTCTTCACAGCCGTGCAACAAGGTAATCTTGAAGCTGTAACAGCTCTGTTACAACAAGACCCGTCACTTTTTCAGCAAACAACTCTCTATGATCGGTTTTCACCTCTTCATATTGCTGCTGCTAATGGCCAGATCGAGATTCTGTCGAGGCTTTTACATGGATCTGTTAGCCCAGATGTTTTAAATCGGCAAAAACAGACTCCTCTTATGTTGGCTGCAATGCATGGAAGGATTGCTTGTGTGGAGAAGCTCCTTGAAGCCGGTGCTAATGTTTTGATGTTTGATACGGTTAATGGAAGAACCTGCTTACACTATGCTGCTTATTATGGCCATTTTTCTTGTCTTCAAGCTATTCTTTTGTCTGCTCAATCAAGTTCTGTGGCTGCTTCTTGGGGTTTTGTTCGGTTTGTGAATGTTAGAGACGGAAAGGGTGCGACGCCATTGCATTTGGCGGCTCGACAAAGAAGGCCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTAGATATGGCTATCCTGGTAGCACTCCACTTCATCTAGCTGCTAGAGGGGGGTCACTTGATTGCATTCGCGAATTGTTAGCATGGGGTGCTGATCGTCTTCAACGCGATTCATCAGGGCAGATACCATATATGGTTGCTATGAAACACAGACACGGATCATGCGCGTCGCTGCTAAATCCTACATCAGCCGAGCCTCTTGTTTGGCCATCTCCATTGAAGTTCATCAGTGAACTTAACGCGGACGCCAAAGCCTTGCTAGAACAAGCCTTGATGGACGCAAACAAAGAAAGGGAGAAAAACATATTGAAAGGCAGCGGTTACTCTCTTCCGTCTCCATCACATTCCGAGTGTGCAGATGACAATATCTCCGAGGTTAGTGAGTCAGAGTTATGTTGCATATGTTTTGAGCAAGTATGCACAATTGAAGTTCAAAACTGTGGTCACCAAATGTGTGCACAATGCACATTAGCCCTATGTTGCTACAACAAACCGAACCCAACAACCGCGTCCATTACTCCACCCGTTTGTCCATTTTGTCGAAGCAACATTTCTCGACTCATGGTTATCACAAAAATAGAAACTCACTACGAAACCGATCAAGACAATGTGGATACCACTTGTTCAAAAACAAACAAGTCAAGGAAACTCCGAAACTTGAACGACAGCGGTAGTAGCAGCTTTAAAGGACTATCTAGCGTAAGCTTCGGAAAATTAGGCGGCCGAAGCTCGGGAAGAGTAGCAGATGATTCCATTATGGTTAAACAAGGTAACTAA 1344 0.4442 MGQNLSCRGSNHDHGLFTAVQQGNLEAVTALLQQDPSLFQQTTLYDRFSPLHIAAANGQIEILSRLLHGSVSPDVLNRQKQTPLMLAAMHGRIACVEKLLEAGANVLMFDTVNGRTCLHYAAYYGHFSCLQAILLSAQSSSVAASWGFVRFVNVRDGKGATPLHLAARQRRPECVHILLDSGALVCASTGRYGYPGSTPLHLAARGGSLDCIRELLAWGADRLQRDSSGQIPYMVAMKHRHGSCASLLNPTSAEPLVWPSPLKFISELNADAKALLEQALMDANKEREKNILKGSGYSLPSPSHSECADDNISEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCYNKPNPTTASITPPVCPFCRSNISRLMVITKIETHYETDQDNVDTTCSKTNKSRKLRNLNDSGSSSFKGLSSVSFGKLGGRSSGRVADDSIMVKQGN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Vifa1g01119 447 SUPERFAMILY RING/U-box 316 377 - -
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Vifa1g01119 447 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Vifa1g01119 447 Gene3D - 84 256 IPR036770 -
Vifa1g01119 447 Pfam Ankyrin repeats (many copies) 196 235 IPR002110 GO:0005515
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
Vifa1g01119 447 PANTHER HOMEOBOX PROTEIN WARIAI 22 378 - -
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Vifa1g01119 447 Gene3D - 2 83 IPR036770 -
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Vifa1g01119 447 Coils Coil 269 289 - -
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 46 75 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 195 224 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 228 257 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 158 187 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 79 108 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 113 144 IPR002110 GO:0005515
Vifa1g01119 447 SMART ANK_2a 11 40 IPR002110 GO:0005515
Vifa1g01119 447 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Vifa1g01119 447 Pfam Ankyrin repeat 159 186 IPR002110 GO:0005515
Vifa1g01119 447 Pfam Ankyrin repeat 113 137 IPR002110 GO:0005515
Vifa1g01119 447 SUPERFAMILY Ankyrin repeat 8 251 IPR036770 -
Vifa1g01119 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 388 IPR013083 -
Vifa1g01119 447 Pfam Ankyrin repeats (3 copies) 16 110 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01119 Vifa-Chr1 183251408 183253504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01119 37 248 Miscellaneous Gene Families AT5G02620 29.091 6.65e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01119 - - gmx:100786708 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01119 1 183251408 183253504 Vifa1g01119 1 183251408 183253504 ECH
Vifa1g01119 1 183251408 183253504 Vifa6g00748 6 266157829 266159856 PCT