Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00710 ATGGCTGCTCCACCGGCAAGGGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTCTTGATCGGCGATAGCGGTGTTGGAAAGAGTTGTCTTCTTTTGCGTTTTTCTGATGGCTCTTTCACAACCAGTTTCATCACAACTATTGGCATTGATTTTAAGATAAGAACCATTGAGCTTGATGCCAAAAGGATCAAGCTCCAAATCTGGGATACTGCAGGGCAGGAGCGGTTTCGGACAATTACGACCGCTTACTATCGTGGTGCTATGGGGATATTGCTAGTCTATGATGTTACAGATGAAGCATCGTTTAACAATATCAGGAATTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATACTGGTTGGGAACAAAGCAGACATGGACGAAAGCAAAAGGGCTGTGCCAACGTCCAAAGGCCAAGCACTGGCTGATGAATATGGAATCAAATTCTTTGAAACTAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTTTCCATAGCAAGAGACATAAAACAAAGGCTTGCTGACACTGACAACAAGGCCGAGCCGACAACAATCAAAATCAACCAAGACTCTGCAGCGGGAGCTGGACAGGCTGCACAAAAGTCAGCATGTTGTGGTTGA 645 0.4419 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDAKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQDSAAGAGQAAQKSACCG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00710 214 NCBIfam small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Vifa6g00710 214 SMART ras_sub_4 17 180 - -
Vifa6g00710 214 ProSiteProfiles small GTPase Rab1 family profile. 11 213 - -
Vifa6g00710 214 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Vifa6g00710 214 ProSiteProfiles small GTPase Ras family profile. 6 214 IPR001806 GO:0003924|GO:0005525
Vifa6g00710 214 SMART rab_sub_5 16 180 - -
Vifa6g00710 214 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Vifa6g00710 214 PRINTS Transforming protein P21 ras signature 155 177 - -
Vifa6g00710 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Vifa6g00710 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Vifa6g00710 214 PRINTS Transforming protein P21 ras signature 119 132 - -
Vifa6g00710 214 PRINTS Transforming protein P21 ras signature 16 37 - -
Vifa6g00710 214 FunFam ras-related protein RABE1c-like 9 213 - -
Vifa6g00710 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 185 IPR027417 -
Vifa6g00710 214 CDD Rab8_Rab10_Rab13_like 13 180 - -
Vifa6g00710 214 SMART ran_sub_2 21 212 - -
Vifa6g00710 214 SMART arf_sub_2 1 181 - -
Vifa6g00710 214 PANTHER LD44762P 7 213 - -
Vifa6g00710 214 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Vifa6g00710 214 Gene3D - 9 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00710 Vifa-Chr6 260396857 260399282 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00710 K07901 - gmx:100779203 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01169 1 190762181 190764397 Vifa6g00710 6 260396857 260399282 PCT