Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01169 ATGGCTCTTCCAAGTGAGGATTACGATTACCTCCTAAAGGTTCTTTTGATCGGCGATAGTGGTGTTGGAAAGAGTTCACTTCTTGTACGATTCTCTGAAGGATCTTTCAGTACTAGTTATCTTCCAACTATGGGCATTGATTATAGAAATCGAAACATAGAGATGCATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAAGAGAGATTCCGAACAATAACAAGAGCTTATTATCGTGGTGCTATGGGCATATTACTAGTTTATGATGTTACAAATGAATCTTCATTTAACAATATTAGGAGTTGGATGCGTAGCATTGAGCAACATGCTTCCGACAATGTCAACAAAATACTGGTTGGAAACAAAGCTGACATGGATGACAACAAAATAGTCGTGCCTACCTCCAAGGGCCAAGCACTAGCCAATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAAACAAGTCGAAATGTGGAAAAAGCTTTCTTCTCAATTACAAGAGATATAAAACAAAGGCTTGATGACACTGACTCTATAAAAATGCCGACAAGAATTAGTATTAGTATCAACCAACGTGCACAAAAGTCGGAATGTTGTGGTTGA 615 0.3837 MALPSEDYDYLLKVLLIGDSGVGKSSLLVRFSEGSFSTSYLPTMGIDYRNRNIEMHGKRIKLQIWDTAGQERFRTITRAYYRGAMGILLVYDVTNESSFNNIRSWMRSIEQHASDNVNKILVGNKADMDDNKIVVPTSKGQALANEYGIKFFETSAKTSRNVEKAFFSITRDIKQRLDDTDSIKMPTRISISINQRAQKSECCG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01169 204 PRINTS Transforming protein P21 ras signature 151 173 - -
Vifa1g01169 204 PRINTS Transforming protein P21 ras signature 35 51 - -
Vifa1g01169 204 PRINTS Transforming protein P21 ras signature 53 75 - -
Vifa1g01169 204 PRINTS Transforming protein P21 ras signature 12 33 - -
Vifa1g01169 204 PRINTS Transforming protein P21 ras signature 115 128 - -
Vifa1g01169 204 SMART rho_sub_3 14 176 IPR001806 GO:0003924|GO:0005525
Vifa1g01169 204 FunFam ras-related protein RABE1c-like 5 203 - -
Vifa1g01169 204 PANTHER LD44762P 5 191 - -
Vifa1g01169 204 SMART rab_sub_5 12 176 - -
Vifa1g01169 204 SMART ras_sub_4 9 176 - -
Vifa1g01169 204 CDD Rab8_Rab10_Rab13_like 9 176 - -
Vifa1g01169 204 ProSiteProfiles small GTPase Ras family profile. 6 204 IPR001806 GO:0003924|GO:0005525
Vifa1g01169 204 SMART ran_sub_2 17 204 - -
Vifa1g01169 204 ProSiteProfiles small GTPase Rab1 family profile. 7 203 - -
Vifa1g01169 204 NCBIfam small GTP-binding protein domain 11 166 IPR005225 GO:0005525
Vifa1g01169 204 Gene3D - 5 203 IPR027417 -
Vifa1g01169 204 ProSiteProfiles small GTPase Rho family profile. 5 182 - -
Vifa1g01169 204 Pfam Ras family 13 174 IPR001806 GO:0003924|GO:0005525
Vifa1g01169 204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01169 Vifa-Chr1 190762181 190764397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01169 12 134 EF-hand Containing Proteins AT5G27540 26.613 2.15e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01169 K07901 - vvi:100243217 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01169 1 190762181 190764397 Vifa1g01169 1 190762181 190764397 ECH
Vifa1g01169 1 190762181 190764397 Vifa6g00710 6 260396857 260399282 PCT