Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00689 ATGGAGTCCTTCTCTTTAATTTATGTAGTTCCAACATTGTACTTGTGTTTCCTATTATGGAAACTATTCGATCGAAAAAGGGACCGAGAATGTTACATATTAGATTACCAATGTCACAAACCAACGCAAGATAGAATGTTAGGCACAGAGTTTTGTGGCAAAATAATCAGAAGAACTGAGAATTTGGGTCTAGATGAGTACAAGTTTCTTCTCAAAGCCATAGTAAGCTCCGGCATCGGCGAGCAAACTTACGCGCCAAGAAACGTCTTCGAAGGCCGGGAAGCATCGGCAACAATCCACGACGGGATCTCGGAGATGGTAGATTTTTTCGACGATAGCATTGTGAAACTCCTAGCCCGGTCGAAAATTTCGCCATCGGAAATCGACGTCCTCGTCGTCAACATCTCCATGCTCTCCGCTCTCCCGTCGCTATCCGCGCGGATCATCAACCGTTACAAACTACGCCACGACGTAAAAGTCTACAACCTCACCGGAATGGGCTGCAGTGCTAGTCTTATATCACTAGATATTGTTCAAAATATTTTTAAATCACAAAGAAACAAGCTAGCACTTTTGGTCACATCAGAATCTCTTAGTCCAAATTGGTATCCAGGAAACAACAAATCAATGATCCTTGCCAACTGTCTTTTCCGCTCAGGCGGTTGCGCGGTTCTTCTAACAAACAAAAGATCCTTAAAGCACAAAGCTATACTGAAACTAAAGTGCTTAGTAAGAACTCACCACGGCGCGAGAGACGAGTCTTTCGGATGTTGTCTACAAAAGGAAGATGAACAAGGCAAGAGTGGTATTTTCCTCGGAAAAACTCTCCCAAAAGCAGCAACAAGAGCATTTGTGGACAATCTAAGAGTAATATCACCCAAAATATTACCAACAAGAGAACTATTTAGGTTTCTTTTAGTGTCACTTTTGGAGAAACTTAAAACAATGAGTTCTTGTTCTTCCAAGTCATCTAGTGGTGGAGGAAAAATAGTTACAAAAAAATCACCATTGAATTTCAAAACCGGTATTGATCATTTTTGTCTCCATACAGGAGGAAAAGCAGTGATAGATGGAGTTGGAATGAGCTTAGATCTAAGTGAACATGATCTTGAGCCAGCAAGGATGACACTTCATCGTTTTGGCAACACTTCTGCTAGTAGTTTGTGGTATGTGTTAGGTTACATGGAAGCAAAAAAGAGATTAAAAAAAGGTGATAGAGTTTTTATGATAAGTTTTGGAGCTGGCTTTAAGTGCAATAGTTGTTTATGGCAAGTGATGAAGGATCTTGGAAATGGATATGGGAATGTTTGGGATGATTGTGTTAATGACTATCCACCAGAGAGTTTGGTTAGTCCTTTCATGGAGAAGTATAGTTGGGTTAATGATGTTGAGGATGCAAACAATATTGAACTTCCTGATTTTCTTAAGTGA 1431 0.4032 MESFSLIYVVPTLYLCFLLWKLFDRKRDRECYILDYQCHKPTQDRMLGTEFCGKIIRRTENLGLDEYKFLLKAIVSSGIGEQTYAPRNVFEGREASATIHDGISEMVDFFDDSIVKLLARSKISPSEIDVLVVNISMLSALPSLSARIINRYKLRHDVKVYNLTGMGCSASLISLDIVQNIFKSQRNKLALLVTSESLSPNWYPGNNKSMILANCLFRSGGCAVLLTNKRSLKHKAILKLKCLVRTHHGARDESFGCCLQKEDEQGKSGIFLGKTLPKAATRAFVDNLRVISPKILPTRELFRFLLVSLLEKLKTMSSCSSKSSSGGGKIVTKKSPLNFKTGIDHFCLHTGGKAVIDGVGMSLDLSEHDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWQVMKDLGNGYGNVWDDCVNDYPPESLVSPFMEKYSWVNDVEDANNIELPDFLK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00689 476 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 342 424 IPR013747 -
Vifa6g00689 476 Pfam FAE1/Type III polyketide synthase-like protein 25 310 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vifa6g00689 476 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Vifa6g00689 476 CDD CHS_like 12 423 - -
Vifa6g00689 476 SUPERFAMILY Thiolase-like 243 426 IPR016039 GO:0016746
Vifa6g00689 476 PANTHER 3-KETOACYL-COA SYNTHASE 15 446 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa6g00689 476 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa6g00689 476 Gene3D - 72 425 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00689 Vifa-Chr6 254298172 254299602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00689 19 473 Acyl Lipid Metabolism Gene Families AT2G28630 70.022 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00689 K15397 - gmx:100809149 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01198 1 195540276 195541700 Vifa6g00689 6 254298172 254299602 PCT