Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01198 ATGGAGTTTCTCTCTTTACTTTTTGGTTTCACAGTAATGCACTTGTGTTTCCTGATCTGGAAATTCTTTGATCAGAGAAGGGACCAAGAGTGTTACATATTAAGCTACCAATGTTACAAGCCAAGTGATGAAAGAAAGCTTGGAAGTGATCTTTGTGGCAAGATCATAGCAAACAATGAGTATATTGGTCTGAATGAGTGCAAGTTCTTCCTGAAAGCCATTGTCAACTCAGGTATTGGCGAGGAAACTTACGCTCCAAGAAACTTCATAGAAGGCCGAGCCGTGAGCCCGACATTGCACGACGAAATCACCGAGATGGAAGAGTTCTGTGACGACAGCATTGCAAAGCTTCTAACAAAATCAGGGCTTTCGCCTTCGGAGATCGACGTTCTCGTGGTAAATGTATCTTTGTTCTCTTCTGTTCCTTCTTTAACTTCAAGAATCATTAACCATTACAAAATGAGAGAGGACATAAAAGCTTATAACCTCGCCGGTATGGGGTGTAGTGCGAGTCTTATCTCGTTAGACATTATTCAAAACATTTTCAAGTCACAGAAGAACAAGTATGCTCTTTTGTTGACATCAGAGTCTCTTAGCACAAACTGGTATTCAGGCAACAACCGGTCAATGATCCTAGCTAACTGTCTTTTTCGCACCGGCGGATGCGCTATTCTTCTCACAAACAAAAGATCCTTAAAGCACAAAGCTATACTGAAACTAAAGTGCTTAGTCCGAACTCATCATGGCGCCAGAGACGACGCGCATAACTGTTGTAGCCAAAAGGAAGACGAACAAGGCCGCCTTGGTTTCTACCTAGCTAAAGATCTACCCAAAGCGGCGACACGAGCTTTCGTCGATAATCTAAGAGTCTTATCACCTAAAATCTTACCAGCTAGGGAACTAGTCAGGTTTCTTTTCAAGTCTCTCGTTAAAAAAGTGACAAAGTTTCGTTATCCTAAGTCAGCCGCAGGTGCTGGTGCAACAACGAACAAATCACCCTTGAATTTCAAAACCGGTGTTGATCATTTCTGTCTCCACACAGGAGGAAAAGCGGTGATAGACGGAATCGGAATGAGCCTAGATCTGAGTGAATATGACCTTGAGCCAGCAAGAATGTCCTTGCACAGATTTGGAAACACATCAGCTAGTAGCTTATGGTATGTGCTAGGGTATATGGAAGCAAAGAAGAGGCTGAAAAAAGGTGAGAGAGTGTTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAATAGCTGTTTGTGGGAGGTAATGAGAGATGTTGGAGATAGAAATGTGTGGGACGATTGCATTGATAACTATCCACCACATTCATTGGCCAACCCATTCATGGAGAAGTACGGTTGGATTAATAGTATTCAAGATGCAGACACTTTCAGACTAAAACTAGCTCAGTTTTTTTCAAACTAA 1425 0.4211 MEFLSLLFGFTVMHLCFLIWKFFDQRRDQECYILSYQCYKPSDERKLGSDLCGKIIANNEYIGLNECKFFLKAIVNSGIGEETYAPRNFIEGRAVSPTLHDEITEMEEFCDDSIAKLLTKSGLSPSEIDVLVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLAGMGCSASLISLDIIQNIFKSQKNKYALLLTSESLSTNWYSGNNRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGRLGFYLAKDLPKAATRAFVDNLRVLSPKILPARELVRFLFKSLVKKVTKFRYPKSAAGAGATTNKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCLWEVMRDVGDRNVWDDCIDNYPPHSLANPFMEKYGWINSIQDADTFRLKLAQFFSN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01198 474 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 340 421 IPR013747 -
Vifa1g01198 474 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Vifa1g01198 474 CDD CHS_like 19 420 - -
Vifa1g01198 474 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 454 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa1g01198 474 SUPERFAMILY Thiolase-like 243 423 IPR016039 GO:0016746
Vifa1g01198 474 PANTHER 3-KETOACYL-COA SYNTHASE 14 441 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa1g01198 474 Gene3D - 62 422 IPR016039 GO:0016746
Vifa1g01198 474 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01198 Vifa-Chr1 195540276 195541700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01198 19 469 Acyl Lipid Metabolism Gene Families AT2G28630 66.083 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01198 K15397 - gmx:100776947 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01198 1 195540276 195541700 Vifa1g01198 1 195540276 195541700 ECH
Vifa1g01198 1 195540276 195541700 Vifa6g00689 6 254298172 254299602 PCT