Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00529 ATGGGATTCTCCAAAACCTCTCTGTCTATTTTCTTGTTCTTCCTTTTATTTTCTTCATCTTCTGCAACTTCTCGCATCACTCATCAACAGCTATTGCCAGCAACCAAGTTTTCACCAATTCAACGAGCTGAAAAGCTTATAAGAAGCTTTAACTTATTCCCAAAGGAACCTGTTAATATAATGCATGGTGATCACTCACTCGATCATTTTGTCCCTGGAAAGATCGTAGAGAAGAAGTTCTCGTTTTTCGGTGAATCTGATGAACCTTCTGTTGATGATCTCGGTCACCATGCCGGATATTATTCCCTTTCCATATCTGCAAGGATGTTCTATTTTTTCTTTGAATCAAGAAATGGTACTGAGGATGCACCAGTTGTGATATGGTTGACAGGAGGACCAGGTTGTTCCAGTGAACTAGCTTTGTTTTATGAGAATGGTCCTTTTAAAATCAACAATGATTTGTCTCTTTCATGGAATGACTATGGTTGGGACAAGGAATCAAATATTATTTTTGTTGACCAACCCATTGGAACAGGTTTTAGCTACAGTTCTAATGATAATGATATTCCTCATGATGAAACTGGTGTTAGCAATGATTTGTATGACTTCTTACAGGAGTTTTTCAAGCAGCATCCTGAGTATGTTAAGAATGACTTTTATATTACCGGCGAATCTTACGCTGGACACTATGTTCCGGCGCTTGCGTCCCGAGTTCGCCAAGGAAACAAAGACAACAAAGGGATTACTATAAACCTCAAGGGTTTTGCTATTGGTAATGGGTTAACCAACCCAGAAATTCAGTACCAAGCATACACTCAGTTTGCAGTTGATAACGAATTGATTACAAAGGAAGATCAAGCTGGTATCAACAAGTTGATCCCACCGTGTTTGGATGCCACTAAAACTTGTGAAAGTGAAGGCGGAGAAAGTTGCTTAACAGCCTTAAATCAATGCGATCATATAATGAGTAGTATTTTGTCCATTACTGACAACATTAACTACTATGACATCAGAAAGACATGCGAGGGACCATTGTGTTACGACTTCTCAAATCTAGAGACTCTTCTAAATGAGAAGACAGTTAGGGATGCTATAGGTGTTGGAAATATAGAATTTGTTTCATGCAGCAAAGTAGTATATAATGCTATGCTGCAAGATTGGATGAGAAACCTTGAAGTGGATATTCCTTCACTTCTTGAAGACGGAATCAAGGTTCTTATATATGCAGGAGAATTTGATTTTATTTGCAACTGGCTTGGGAATTCAAATTGGGTTCATAGCATGAATTGGTCAGGTCAAAAACAGTTCGTGGCATCCAAAACAGTTCAGTTTTTGGTTGATGGTACAAAAGCAGGATTGTTGAATAGCTATGGACCTCTCTCTTTTCTAAAGGTGAATGGTGCTGGACATATGGTTCCTATGGATCAACCAAAAGCTGCACTTCAGATGTTGGGTAACTGGATTGAAGGGAACCTGAACCAGACAAGCGTTTAA 1494 0.3889 MGFSKTSLSIFLFFLLFSSSSATSRITHQQLLPATKFSPIQRAEKLIRSFNLFPKEPVNIMHGDHSLDHFVPGKIVEKKFSFFGESDEPSVDDLGHHAGYYSLSISARMFYFFFESRNGTEDAPVVIWLTGGPGCSSELALFYENGPFKINNDLSLSWNDYGWDKESNIIFVDQPIGTGFSYSSNDNDIPHDETGVSNDLYDFLQEFFKQHPEYVKNDFYITGESYAGHYVPALASRVRQGNKDNKGITINLKGFAIGNGLTNPEIQYQAYTQFAVDNELITKEDQAGINKLIPPCLDATKTCESEGGESCLTALNQCDHIMSSILSITDNINYYDIRKTCEGPLCYDFSNLETLLNEKTVRDAIGVGNIEFVSCSKVVYNAMLQDWMRNLEVDIPSLLEDGIKVLIYAGEFDFICNWLGNSNWVHSMNWSGQKQFVASKTVQFLVDGTKAGLLNSYGPLSFLKVNGAGHMVPMDQPKAALQMLGNWIEGNLNQTSV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00529 497 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Vifa6g00529 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 460 477 IPR033124 GO:0004185
Vifa6g00529 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 90 477 IPR001563 GO:0004185|GO:0006508
Vifa6g00529 497 FunFam Carboxypeptidase 84 497 - -
Vifa6g00529 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Vifa6g00529 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Vifa6g00529 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Vifa6g00529 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Vifa6g00529 497 Pfam Serine carboxypeptidase 94 490 IPR001563 GO:0004185|GO:0006508
Vifa6g00529 497 Gene3D alpha/beta hydrolase 76 496 IPR029058 -
Vifa6g00529 497 SUPERFAMILY alpha/beta-Hydrolases 95 490 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00529 Vifa-Chr6 206565391 206567868 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00529 K16298 - gmx:100798795 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00529 6 206565391 206567868 Vifa1g01251 1 202512115 202514545 PCT