Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01251 ATGGCATCATCATCATCCTTAAACTTCCTCAAAACGTGTCTTTCTTTCCCAACGTTGTTGTTCTTCCTCTTGTTCATTTCACCTTCTTTCTCATCTCCAACTGCATCCTTGGGAAATTTACAAGCAGAAAATCTCATAAGAGGACTTAATCTTTTTCCAAAAGATTCCGTTAACACACCACAGAATGATCCTCATGTTGTTAGTGGCAATATTGTTGAGAAGAAGTTCACTTTCCCTGGTTTTTCTCATTCTGGTTTGTCTGTTGAAGAACTTGGCCATCATGCCGGGTATTATCGGCTTCCTAATACCAAAGCTGCAAGGATGTTCTACTTTTTCTTCGAATCTCGAAACAAGAAAGATGACCCTGTTGTCATCTGGTTAACTGGAGGTCCAGGATGCAGCAGTGAGATTGCTATGTTTTATGAAAATGGTCCTTTTCAATTTTCCAAAAACTTGTCCCTTGTTTGGAATGAATATGGGTGGGATCAGGCATCAAATATTATATTTGTAGACCAACCAACTGGAACAGGTTTTAGCTACACCACTGACGATACCGACATTCGTCACGACGAAGACGGTGTTAGCAATGACCTATACAACTTCTTGCAGGCATTTTTCAAGGAACATCCTCAGTTCACTAAGAACGATTTTTATATTACCGGAGAATCGTATGCCGGACATTACATTCCAGCTTTTGCATCAAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTTAAGGGTTTTGCTATTGGTAATGGATTAACCAATCCTGAAATTCAGTACAAGGCATATCCAGATTATGCATTAGACAATGGATTAATTAATAAAGTTGAACATGACAGAATCAACAATAAGTTGTATCCACCATGTCAAAAGGCTATAGAGGCTTGCGGGACTAAAGGCGGGGAAGCATGCATGACTGCAAGGAGTATTTGCAGTGCCATATTCAATGATATCATGGAAATCGCCGGCAACATTAATTACTATGACATTAGAAAACAATGTGTGGGAAGTCTTTGTTATGACTTCTCCAATGTGGAAACATTCTTGAACATGGGTATAGTCAGAAAAGCTTTAGGTGTTGGGGACTTGGAATTTGTTTCTTGCAGTAGCACAGTATACAGTGCCATGATGGAGGATTGGATGAAAAATCTTGAAGTTGGTATTCCTGCTCTTCTTGAGGATGGAATCAAGTTGCTTGTGTATGCTGGAGAAAAAGATCTCATTTGCAATTGGCTTGGTAATTCAAGGTGGGTTGATGCCATGAAGTGGTCCGGTCAAAAAGAATTTGAGACGTCTCCTATAACACCATATTTGGTTGATAGAAAAGAAGCAGCAAGTCTGAAAACACATGGACCACTTGCTTTCCTCAAGGTGAAAGAGGCCGGTCACATGGTTCCCATGGATCAACCAAAAGCTGCTCTTCAGATGTTACAAGATTGGATGCAAGGGAAACTAGTGAAGAGAAAGGGAGGAGATAATGTTTCGCCTATATGA 1512 0.3995 MASSSSLNFLKTCLSFPTLLFFLLFISPSFSSPTASLGNLQAENLIRGLNLFPKDSVNTPQNDPHVVSGNIVEKKFTFPGFSHSGLSVEELGHHAGYYRLPNTKAARMFYFFFESRNKKDDPVVIWLTGGPGCSSEIAMFYENGPFQFSKNLSLVWNEYGWDQASNIIFVDQPTGTGFSYTTDDTDIRHDEDGVSNDLYNFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYKAYPDYALDNGLINKVEHDRINNKLYPPCQKAIEACGTKGGEACMTARSICSAIFNDIMEIAGNINYYDIRKQCVGSLCYDFSNVETFLNMGIVRKALGVGDLEFVSCSSTVYSAMMEDWMKNLEVGIPALLEDGIKLLVYAGEKDLICNWLGNSRWVDAMKWSGQKEFETSPITPYLVDRKEAASLKTHGPLAFLKVKEAGHMVPMDQPKAALQMLQDWMQGKLVKRKGGDNVSPI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01251 503 FunFam Carboxypeptidase 80 499 - -
Vifa1g01251 503 SUPERFAMILY alpha/beta-Hydrolases 92 490 IPR029058 -
Vifa1g01251 503 Gene3D alpha/beta hydrolase 71 501 IPR029058 -
Vifa1g01251 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Vifa1g01251 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Vifa1g01251 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Vifa1g01251 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
Vifa1g01251 503 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Vifa1g01251 503 Pfam Serine carboxypeptidase 90 489 IPR001563 GO:0004185|GO:0006508
Vifa1g01251 503 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 87 476 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01251 Vifa-Chr1 202512115 202514545 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01251 K16298 - gmx:100785987 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01251 1 202512115 202514545 Vifa1g01251 1 202512115 202514545 ECH
Vifa6g00529 6 206565391 206567868 Vifa1g01251 1 202512115 202514545 PCT