Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00448 ATGATAACCGCCGTTATTCTCTTCACCGTTACAATTCTCTCCGCGGCGGATGGTTCTTCTTCTCCGATCACTCTATCGCTTGAAAGAGCTTTTCCTACTAACCATGGAGTTGAGTTGAGTTACCTCAGAGAATTTGATAGTGTTAGACATCGGAGATTTTTGCAGTCTACTAACTATGTTGTTAATTTTCCTGTTAAAGGATCCTTTGATACCTCCAAAGCTGGGCTTTACTTTACGAAGGTGAATTTAGGTACTCCACCAAGAGAATTTTATGTGCAGATTGACACCGGAAGTGATGTTCTTTGGGTTACCTGTGCTTCCTGCATCGGTTGTCCTCAAACAAGTGGTCTCCAAATTCAGCTGAATTACTTTGACCCTAGAAGTTCGTCAACGTCTTCATTTATTTCTTGTTCTGACCAAAGGTGTAAGAACGGAGTTCAGTCATCGGATAGCAGTTGTTCGAGTCGGAACAATCAATGCACTTACATATTCGACAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAATTGATGGTATATTTGGATTTGGGCAACAGGGCATGTCAGTAATTTCTCAGCTCTCTTCACAAGGAATAGCACCAAGAGTGTTCTCACACTGCTTGAAAGGAGATAGTAACGGTGGCGGCTTATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAATTTATAGTCCACTCGTTCCGTCACAGCCTCATTATAATCTAAATCTGCTGAGCATCTCTGTCAGTGGCCAAGTTTTGCCGATTGATTCTGCTATTTTTGCTACATCAAACAATAGAGGTACCATTATTGATTCTGGAACAACTTTGGCATACATTGCAGAAGAGGCTTACAATCCCTTTATCAATGCGATTACCGCTGCCATTCCACAATCTGTGCGCACTGTTCTTTCCAGAGGAAATCAGTGTTACTTAGTTACCACCAGCCTTGACATGTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGCGTCTCTCGTTTTAGGACCACAGGACTACCTCATAAAGCAGAACTATATTGGAGATGGATCAGTTTGGTGTATCGGCTTTCAGAAAATCCCAGGGCAAGATGTAACAATTCTAGGAGACCTTGTATTAAAAGACAAAATTTTTGTGTATGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCGTTGTCGGTTAATGTTTCTGCATCAACTGGTAGCGGCAGAAGTGAGTTTGTCAGCGCGGGAGAGATAAGTGGAAGCACTTCTTTATGTGACAGAACTCACGAGTTGATAAACAGAAGATGGGTCTTTGCTCTTTTCATACACATAACACTGATATGCTGTTTTGTATTCTTGTAG 1362 0.4214 MITAVILFTVTILSAADGSSSPITLSLERAFPTNHGVELSYLREFDSVRHRRFLQSTNYVVNFPVKGSFDTSKAGLYFTKVNLGTPPREFYVQIDTGSDVLWVTCASCIGCPQTSGLQIQLNYFDPRSSSTSSFISCSDQRCKNGVQSSDSSCSSRNNQCTYIFDNQQSGDLTKSDRAIDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDSNGGGLLVLGEIVEPNIIYSPLVPSQPHYNLNLLSISVSGQVLPIDSAIFATSNNRGTIIDSGTTLAYIAEEAYNPFINAITAAIPQSVRTVLSRGNQCYLVTTSLDMFPQVSLNFAGASLVLGPQDYLIKQNYIGDGSVWCIGFQKIPGQDVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLSVNVSASTGSGRSEFVSAGEISGSTSLCDRTHELINRRWVFALFIHITLICCFVFL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00448 453 ProSiteProfiles Peptidase family A1 domain profile. 77 391 IPR033121 -
Vifa6g00448 453 SUPERFAMILY Acid proteases 74 398 IPR021109 -
Vifa6g00448 453 Gene3D Acid Proteases 53 176 IPR021109 -
Vifa6g00448 453 FunFam Aspartic proteinase-like protein 2 225 402 - -
Vifa6g00448 453 Pfam Eukaryotic aspartyl protease 77 392 IPR033121 -
Vifa6g00448 453 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Vifa6g00448 453 PRINTS Pepsin (A1) aspartic protease family signature 271 282 IPR001461 GO:0004190|GO:0006508
Vifa6g00448 453 PRINTS Pepsin (A1) aspartic protease family signature 367 382 IPR001461 GO:0004190|GO:0006508
Vifa6g00448 453 CDD pepsin_A_like_plant 77 395 IPR034161 -
Vifa6g00448 453 PANTHER ASPARTYL PROTEASES 10 389 IPR001461 GO:0004190|GO:0006508
Vifa6g00448 453 Gene3D Acid Proteases 203 423 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00448 Vifa-Chr6 175123078 175125596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00448 51 396 Miscellaneous Gene Families AT1G44130 24.688 2.73e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00448 - - gmx:100789004 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02479 1 395164079 395167850 Vifa6g00448 6 175123078 175125596 PCT