Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02479 ATGGCGGTCGTTTTTGTAATATTGCTGGTGATGCTAACGGCGGCGACGGTTATTTCTGGATCGCCGGTGACTCTCACGTTGGAAAGAGCGTTTCCGACGAACCATGGAGTGGAGATGAATCAGCTCAGAGCGAGAGATTTGTTGAGACATCGGAGAATTTTGCAGTCTTCAAACGGTGTTGTTGATTTCGATGTTCATGGTACCTTCGATCCCTTCCAAGTCGGGCTATATTTTACAAAGGTGCAGTTAGGTACTCCTCCAGTAGAATTTTATGTGCAAATTGACACTGGAAGTGATGTTCTTTGGGTCAGTTGCAGCTCCTGCACTGGTTGTCCACAGACAAGTGGGCTACAGCTTGAACTCAATTTTTTCGACACTGGGCGTTCGTCGACATCGTCATTAATCTCGTGTTCTGACCGAAGGTGCAACAGTGGAATACAGTCATCAGATGCAACCTGTTCCAGTCAGAACAACCAGTGTTCTTACACTTTTCAGTATGGAGATGGTAGTGGAACATCAGGCTATTATGTGTCAGATACGATGCATTTGGATACTATTTTTGAGGGATCTGTGGCTACAAATTCTTCCGCTCCTGTAGTTTTTGGTTGTAGTAACCAGCAGAGTGGAGACTTGACAAAGTCCGACAGAGCAGTTGATGGTATATTTGGATTCGGGCAACAGGAAATGTCTGTGATCTCCCAGCTCTCCTCACAAGGGATTGCTCCTAGAGTATTCTCACATTGTCTTAGAGGAGATAGCACTGGCGGAGGAGTTTTGGTCCTTGGTGAGATTGTCGAGCCTAACATAGTTTATACTCCACTAGTTCCATCACAGCCTCACTACAACTTAAATCTACAGAGCATCTCTGTCAACGGCCAGGCATTGCAAATCGCTGCATCAGTTTTCGCTACATCAAACAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTACAATGCCACAATCTGTACGCACTGTTGTTTCTAGGGGAAATCAGTGTTTCTTAATTACTAGCAGTGTCGCTGATATATTTCCTCAAGTAAGTCTAAACTTTGCTGGTGGTGCATCAATGGTTTTAAGGCCACAGGACTACCTTATACAGCAAAGTTCTGTTAGTGGTGCAGCAGTGTGGTGCATCGGCTTTCAGAAAATCCAGGGTCAAGGGGTGACAATTCTAGGAGATCTCGTATTAAAGGACAAAATTATTGTTTATGATCTGGCCGGTCAACGTATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTTAACGTCTCTGCAGCAACTGGCACTGGCAGAAGTGAATATGTGAATGCTGGAGAGATAAGTGGGAGCACTTCTTTACATGATATACATAAGCATCCAAAGACAGTATTCTTGTCTCTCTTTGTAGCATTGATTTGCTGCTTTGTGTTCTTATAG 1476 0.4417 MAVVFVILLVMLTAATVISGSPVTLTLERAFPTNHGVEMNQLRARDLLRHRRILQSSNGVVDFDVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCTGCPQTSGLQLELNFFDTGRSSTSSLISCSDRRCNSGIQSSDATCSSQNNQCSYTFQYGDGSGTSGYYVSDTMHLDTIFEGSVATNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLRGDSTGGGVLVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQIAASVFATSNNNRGTIVDSGTTLAYLAEEAYDPFVNAITATMPQSVRTVVSRGNQCFLITSSVADIFPQVSLNFAGGASMVLRPQDYLIQQSSVSGAAVWCIGFQKIQGQGVTILGDLVLKDKIIVYDLAGQRIGWANYDCSLSVNVSAATGTGRSEYVNAGEISGSTSLHDIHKHPKTVFLSLFVALICCFVFL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02479 491 Gene3D Acid Proteases 264 443 IPR021109 -
Vifa1g02479 491 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Vifa1g02479 491 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Vifa1g02479 491 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Vifa1g02479 491 FunFam Aspartic proteinase-like protein 2 264 444 - -
Vifa1g02479 491 Gene3D Acid Proteases 59 263 IPR021109 -
Vifa1g02479 491 CDD pepsin_A_like_plant 77 437 IPR034161 -
Vifa1g02479 491 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Vifa1g02479 491 FunFam Aspartic proteinase-like protein 2 60 263 - -
Vifa1g02479 491 SUPERFAMILY Acid proteases 72 440 IPR021109 -
Vifa1g02479 491 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Vifa1g02479 491 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Vifa1g02479 491 PANTHER ASPARTYL PROTEASES 7 431 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02479 Vifa-Chr1 395164079 395167850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02479 51 438 Miscellaneous Gene Families AT1G44130 28.079 2.73e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02479 - - gmx:100791299 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02479 1 395164079 395167850 Vifa1g02479 1 395164079 395167850 ECH
Vifa1g02479 1 395164079 395167850 Vifa6g00448 6 175123078 175125596 PCT