Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00433 ATGGTTGAATCAGAACCAAAATTTTATATACCAGAGTCATTTCAGGTGAACTATGATGTTACAAGTCAATTTAGGATGATTTGGAATGTGATGAAAGCACCATTGATTGTTCCTTTTTTGAATGCCTGTGTTTACATTTCATTAGCAATGGCTCTTATGCTTTTCATGGAGAGAGTTTATATGGGTATAGTTATTGTGTTGATTAAGCTTTTCTGGAAGAAACCTGAACAACGTTATAACTATGAGCCTCTTCAAGATGATGAAGAGCTTGGTGGTTCTAATTTTCCTGTTGTTCTTGTTCAAATTCCAATGTTCAATGAAAGAGAGGTGTATAAGGTTTCTATTGGAGCTGCTTGTGGGCTTTCATGGCCGACGGATCGACTCGTGATCCAAGTTCTTGATGATTCTACGGACCCTGTCGTTAAGCAAATGGTGGAGATGGAATGCCAAAGATGGGCGAGTAAAGGAATAAATATTACATACCAAATAAGAGAAAACAGAGTTGGTTACAAAGCTGGTGCATTGAAAGAAGGATTGAAACGTAGCTATGTTAAACATTGTGAATATGTTGTTATTTTCGATGCTGATTTTAGTCCACCACCTGATTTTCTTAGAAGAGGCATTCCTTTTCTTGTTGGAAATCCTGAACTTGCTCTTGTTCAAGGTCGTTGGCGATTCGTGAATGCTAATGAGTGTTTGTTGACAAGAATGCAAGAGATGTCTTTGGATTATCATTTTACTGTTGAGCAAGAAGTTGGTTCAGCTACTCATGCTTTCTTCGGTTTCAATGGGACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCGGGAGGCTGGAAAGACAGGACAACAGTCGAAGATATGGATCTCGCTGTCCGAGCAAGTCTTAGGGGATGGAAATTTTTGTACCTTGGTGACCTCCAGGCAAACAGCGAACTTCCGAGTACTTTGAGGGCCTTCAGATTCCAGCAGCATCGATGGTCTTGCGGTCCTGCTAATCTTTTCCGCAAAATGGCAATGGATATTATAAGGAACAAGAAAGTGAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCCTTGTTCGTAAAATCGTAGCTCACATGGTCACTTTCTTCTTCTACTGTCTCGTAATTCCCCTCACAATTTTGGTTCCCGAGGTTTATGTTCCAATTTGGGGAGCCGTTTATATTCCTTCCATCATCACCATTCTCAACTCCGTCGGAACACCAAGGTCGATTCATCTTTTGTTCTATTGGATCCTTTTCGAGAATGTCATGTCTCTGCATCGTACCAAGGCAACCCTTATCGGTTTGTTAGAATACGGAAGGGCCAACGAATGGGTTGTAACCGAAAAACTCGGAGATTCTGTTAACAACAATAAACTCAAATCTGATGCTGCTGCCAAGAAGGGCAATGTCAAAGTTCAAAAGAAAACAAGATCCAAATTTATGGAAAGGCTAAATTTGTTGGAGCTGGGATTTGCGGTCTTTCTCTTCTTCTGTGGATGCTATGATTATGTGCATGGAAAACACAACTACTTCATTTACCTCTTCCTTCAAACCTTAACCTTCACAATTGTAGGGTTTGGTTATGTTGGAACCATAGTGTAA 1620 0.4006 MVESEPKFYIPESFQVNYDVTSQFRMIWNVMKAPLIVPFLNACVYISLAMALMLFMERVYMGIVIVLIKLFWKKPEQRYNYEPLQDDEELGGSNFPVVLVQIPMFNEREVYKVSIGAACGLSWPTDRLVIQVLDDSTDPVVKQMVEMECQRWASKGINITYQIRENRVGYKAGALKEGLKRSYVKHCEYVVIFDADFSPPPDFLRRGIPFLVGNPELALVQGRWRFVNANECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQANSELPSTLRAFRFQQHRWSCGPANLFRKMAMDIIRNKKVKFWKKVYVIYSFFLVRKIVAHMVTFFFYCLVIPLTILVPEVYVPIWGAVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATLIGLLEYGRANEWVVTEKLGDSVNNNKLKSDAAAKKGNVKVQKKTRSKFMERLNLLELGFAVFLFFCGCYDYVHGKHNYFIYLFLQTLTFTIVGFGYVGTIV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00433 539 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 21 537 - -
Vifa6g00433 539 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 375 IPR029044 -
Vifa6g00433 539 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 315 IPR029044 -
Vifa6g00433 539 FunFam Glucomannan 4-beta-mannosyltransferase 9 87 315 - -
Vifa6g00433 539 Pfam Glycosyl transferase family group 2 189 381 IPR001173 -
Vifa6g00433 539 CDD CESA_CaSu_A2 96 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00433 Vifa-Chr6 169979339 169984194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00433 5 539 Miscellaneous Gene Families AT5G22740 79.740 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00433 K13680 - gmx:100802752 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00433 6 169979339 169984194 Vifa6g00433 6 169979339 169984194 ECH
Vifa3g00985 3 242933921 242940146 Vifa6g00433 6 169979339 169984194 ECH