Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00985 ATGGAGGCATTTGAAGTAGTGAATGAAGGGATTGGTGAGCAAATTGAGTTTATTTGGAGGAAAATTAGAGAGCCTGTGATTGTGCCAATGCTGAGAGTTGCGGTGCTTTTGTGCCTAGGCATGTCGGTGATGATGTTGGTTGATAAAGTTTATATGGGAATTTCGATTTGTTTGGTGAAGTTGTTTGGGAGAAAACCAGAGAAGCGTTATAAATGGGAGAGTTTTGAGGATGATCTTGAGTTGGAGAACTCTAATTACCCAATGGTTCTTGTTCAAATTCCAATGTATAATGAAGGAGAGGTTTATCAGTTATCAATTGGTGCTGCATGTGGATTATCTTGGCCATCTAATAGACTCATCATACAAATTCTTGATGATTCAACTGACCCAACAATTAAGGAGTTGGTGCAGGTGGAATGCAATATATGGGGAAGCAAAGGAGTGAACATAAAGTACGAAGTTAGAGGACAATAG 474 0.3924 MEAFEVVNEGIGEQIEFIWRKIREPVIVPMLRVAVLLCLGMSVMMLVDKVYMGISICLVKLFGRKPEKRYKWESFEDDLELENSNYPMVLVQIPMYNEGEVYQLSIGAACGLSWPSNRLIIQILDDSTDPTIKELVQVECNIWGSKGVNIKYEVRGQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00985 157 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 13 156 - -
Vifa3g00985 157 SUPERFAMILY Nucleotide-diphospho-sugar transferases 83 152 IPR029044 -
Vifa3g00985 157 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 157 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00985 Vifa-Chr3 242933921 242940146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00985 2 155 Miscellaneous Gene Families AT5G03760 64.935 3.44e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00985 K13680 - gmx:100814280 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00985 3 242933921 242940146 Vifa6g00433 6 169979339 169984194 ECH
Vifa3g00985 3 242933921 242940146 Vifa3g00985 3 242933921 242940146 ECH