Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01897 ATGGCTGTTGCTACTCAACTTAGAGTTTCATATCTCACAAACACACTTCGTGGTCGTAAATCTTGGACTTCTACTTATCATTCATGGAACTTATCGCTACCAAGATCAAAATCTGGAACTATGCATCATAAATTATTGATCATGTCCATTGCTCTGAATGATAACAAGTTGCGACCTTTACGGAAAGATGACAAGACCCGAAGTTTGGAGCAAGTTAAAAGAAGAAGCCAGGAAGCATTGTTAAACTCAAGTGATCCTATTGAAACAATGAAGATGATTGACTCAATCCAAGGGCTAGGAATTAGTCACCATTTGGAAGATGAAATCAATATACAACTTGGAAGGATATGTGATTGGGATGCTTCTACAAACCTCTTTTCCACATCCCTTCAATTCCGTTTACTTAGACATAATGGCTGGCCTACATCTTCTGACATATTCAGAAAATTTTTGGACAAAAATGGCAATTTCAAAGAGTCACTCACCAAAGACATTTATGGTATGTTGAGCCTATATGAGGCATCATATTTAGGGACAGAAGATGAACAAGTATTAAAGAAAGCCATGGAATTTTCAAGGGCTCATCTAAATAAGTTAATCTCACACATGAGTCCTGAAATAGGTTATAAGCACATTGTTAGATCATTAACACTTCCAAGGCATCTAAGAATGATAAGACTAGAAGCTAGAAACTACATGGATGAATATAGCCATGCAAGTAACCAAGTACCAACTTTTTTGGAATTGGCAAAGTTAGACTCTGGCATGTTTCAGTTACTACATCAAAGAGAATTAGCAGAAATATGCAGGTGGTGGAAAGAGTTGGGACTTATAGAGAAACTAAGTTTTGCAAGAGATAGACCAACAGAGTGCTTTTTATGGACAGTGGGAATTTTTCCAGAACCATGTCATACGAATTGTCGTATCGAACTTACAAAAACCATATGCATTTTGGATGTTATTGATGATATCTTTGACAATTATGGCACATTAGACGAACTTGTTCTTTTCACAGATGCAATCAAAAGGTGGGACCTTGATTCAATGGAGCAACTTCCCGAGTATATGAAAATATGTTATATGGCATTATATAACACCACAAATGAAATTTCGTGTAGAATTCTGAAAGAACATGGGCTACCTGTTGTTTCTAACTTGAAAAAAACATGGATGGACATGTTTGATGCATATTTGGAAGAAGCGAAATGGTTCAATAGTGGACATGTGCCAAGTTTAAGGACATATTTGGATAATGGAGCAATTTCTGTTGGATCATGTATGGCTATGGTGCATGCTGCTTTCCTCATTGGTGATGGTCTCTCAAAGGAAACCATTTCCATGATGAAACCATATCCTAGACTCTTCACTTGCTCTGGAGAAATTCTCCGACTATGGGATGATTTAGGAACTTCAACGGAGGAACAAGAAAGAGGGGATAATGCTAGCAGCATACAATGCTTCATGGAAGAAAATAGTAGTGTAGATGAAAATGAAGGAAGGAAACACATAAGGTTGCTAATAGGAAACTTGTGGAGAGAGCTTAATGGTCTTGCCATGACCAAAACCATACCTTTACCTGTTGTCAAAGCTTCTCTTAACATGGCTAGAACTGCTCAAGTTGTTTATCAACATGGAGATGATAAAAGCACTTTTACTGTTGATGATTATGTGCAAACATTGATATTCACATCATTACCTACTAGTCATTAA 1710 0.3702 MAVATQLRVSYLTNTLRGRKSWTSTYHSWNLSLPRSKSGTMHHKLLIMSIALNDNKLRPLRKDDKTRSLEQVKRRSQEALLNSSDPIETMKMIDSIQGLGISHHLEDEINIQLGRICDWDASTNLFSTSLQFRLLRHNGWPTSSDIFRKFLDKNGNFKESLTKDIYGMLSLYEASYLGTEDEQVLKKAMEFSRAHLNKLISHMSPEIGYKHIVRSLTLPRHLRMIRLEARNYMDEYSHASNQVPTFLELAKLDSGMFQLLHQRELAEICRWWKELGLIEKLSFARDRPTECFLWTVGIFPEPCHTNCRIELTKTICILDVIDDIFDNYGTLDELVLFTDAIKRWDLDSMEQLPEYMKICYMALYNTTNEISCRILKEHGLPVVSNLKKTWMDMFDAYLEEAKWFNSGHVPSLRTYLDNGAISVGSCMAMVHAAFLIGDGLSKETISMMKPYPRLFTCSGEILRLWDDLGTSTEEQERGDNASSIQCFMEENSSVDENEGRKHIRLLIGNLWRELNGLAMTKTIPLPVVKASLNMARTAQVVYQHGDDKSTFTVDDYVQTLIFTSLPTSH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01897 569 SUPERFAMILY Terpenoid synthases 244 550 IPR008949 -
Vifa1g01897 569 Gene3D Farnesyl Diphosphate Synthase 62 550 IPR008949 -
Vifa1g01897 569 CDD Terpene_cyclase_plant_C1 68 562 IPR044814 GO:0010333|GO:0016102
Vifa1g01897 569 Gene3D - 84 242 IPR036965 GO:0010333|GO:0016829
Vifa1g01897 569 SFLD Terpene Cyclase Like 1 C Terminal Domain 244 563 IPR034741 -
Vifa1g01897 569 PANTHER OS04G0344100 PROTEIN-RELATED 71 548 - -
Vifa1g01897 569 Pfam Terpene synthase family, metal binding domain 247 513 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vifa1g01897 569 FunFam Isoprene synthase, chloroplastic 217 556 - -
Vifa1g01897 569 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 65 238 IPR008930 -
Vifa1g01897 569 Pfam Terpene synthase, N-terminal domain 60 203 IPR001906 GO:0010333|GO:0016829
Vifa1g01897 569 SFLD Isoprenoid Synthase Type I 244 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01897 Vifa-Chr1 307760583 307762782 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01897 - - gmx:100807904 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01897 1 307760583 307762782 Vifa1g01897 1 307760583 307762782 ECH
Vifa1g01897 1 307760583 307762782 Vifa6g00230 6 99094432 99098534 PCT