Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00192 ATGGCCGCCGTAACTTCTTCCTTCTCTTTCTCAACACCCACTCAATCTCCTTCTCAAAGGAAACTCACAGTTTCTTCCACTCGCTTCCTTAGTTCCGATTCAGATGCCGTTCGCTTTCGTTTCAGCTTATCGTCTCACTGTGTTGGAGTTCGAACTTCCAATTCCGTTTCAAAACTGGCTGTTCGGTGCTCCTCTTCTGTTTCAGACCCTCTTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGGCCAATACCTAGTATTTACAACTCCGTGCTTCAAGAGCTAATTGTGCAGCAACATCTGATGAGATACAAGAAGTCATACCGCTACGATCCTGTATTTGCACTTGGCTTTGTTACTGTATATGATCAGCTCATGGACGGGTATCCAAGTGATGAGGACAGAGATGCCATCTTCCAAGCATACATTAATGCATTGAAGGAAGATCCAGAACAATACAGAGTAGATGCACAGAAGTTGGAAGAGTGGGCTCGTGCTCAAAATTCAAGTTCCCTTATTGAGTTTTCATCCAGGGAAGGAGAAGTTGAGGGGATCTTAAAGGATATTGCAGAGAGAGCAGGTGGAAAGGGGGATTTCAGTTATAGTCGATTCTTTGCAGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCAATGGAACCGACAATTTTGGAAAAGCTTTGTGCGGCTTTGAATATCAACAAAAGAAGTGTGGATCGGGACTTGGACGTGTATCGCAATCTGCTTTCTAAGCTGGTTCAAGCTAAAGAGCTGCTGAAGGAATATATTGACAGGGAAAAGAAGAAAAGACAAGAAAGGACTGAACCACAGAAGACTAATGAGGCCATTACAAAATGA 873 0.4318 MAAVTSSFSFSTPTQSPSQRKLTVSSTRFLSSDSDAVRFRFSLSSHCVGVRTSNSVSKLAVRCSSSVSDPLPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMDGYPSDEDRDAIFQAYINALKEDPEQYRVDAQKLEEWARAQNSSSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKRQERTEPQKTNEAITK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00192 290 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 290 IPR017499 GO:0010207|GO:0015979
Vifa6g00192 290 Coils Coil 250 277 - -
Vifa6g00192 290 Pfam Thylakoid formation protein 73 278 IPR017499 GO:0010207|GO:0015979
Vifa6g00192 290 NCBIfam photosystem II biogenesis protein Psp29 72 275 IPR017499 GO:0010207|GO:0015979
Vifa6g00192 290 Hamap Protein Thf1 [thf1]. 68 276 IPR017499 GO:0010207|GO:0015979
Vifa6g00192 290 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00192 Vifa-Chr6 81241896 81245230 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00192 - - gmx:100792508 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00192 6 81241896 81245230 Vifa6g00192 6 81241896 81245230 ECH
Vifa1g01814 1 295355884 295357756 Vifa6g00192 6 81241896 81245230 PCT