Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01814 ATGGCTGCTCTATCTTCTCTGTCATTCTCAGCAATGAACTCACAGAGAAAATCAACTCTTCCTTCCACTCGTTACCTTGCTTCCAATTCTGATATCTTTGGAATTCGGACAGATTCCTCGTATCATTGTGTCGGTGTTCGAGCTTCCAATTCTTCATCTAATATGGTTATTCAATGCATGTCTTCAGTCACAGATGTTCCCAGTGTTTCTCAGACAAAGTTAAACTTCCTAAAGGCGTATAAACGACCGATCCCAAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAGCAACATTTAATGAGATACAAAACATCATACCGTTATGATCCGGTATTTGCTCTTGGTTTTGTCACTATATATGATAAATTCATGGAAGGGTATTCTAGTGAAGAAGACCGAGACACTATATTTAAAGCTTATATTAACGCGTTGAAGGAAGATCCAGAACAATACAGAATAGATGCACAAAAGTTGGAAGAGTGGGCTAGAGCTCAAAATTCATCTTCTCTGGTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAGGGGATTTTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGAGAATTTAGTTATAGTCGTTTCTTTGCGGTAGGCCTTTTTCGTCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGATAAGCTTTGTGCGGCTTTGAACATCAACAAAAAAAGCGTTGATAGGGACTTGGATGTGTATCGTATGCTGCTTTCCAAGCTAGTTCAAGCAAAGGAGTTGCTAAGAGAATATATTGACAGGGAGAAGAAGAAAAGTGAAGAAAGGGCTGAACCACAGAAGGCTAACGGGGCCATTTCAAAATGTTTGGGGCAACAATTGTCTGTTCTGTAG 885 0.3966 MAALSSLSFSAMNSQRKSTLPSTRYLASNSDIFGIRTDSSYHCVGVRASNSSSNMVIQCMSSVTDVPSVSQTKLNFLKAYKRPIPSIYNNVLQELIVQQHLMRYKTSYRYDPVFALGFVTIYDKFMEGYSSEEDRDTIFKAYINALKEDPEQYRIDAQKLEEWARAQNSSSLVEFSSKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKKSVDRDLDVYRMLLSKLVQAKELLREYIDREKKKSEERAEPQKANGAISKCLGQQLSVL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01814 294 Coils Coil 252 272 - -
Vifa1g01814 294 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 291 IPR017499 GO:0010207|GO:0015979
Vifa1g01814 294 NCBIfam photosystem II biogenesis protein Psp29 65 269 IPR017499 GO:0010207|GO:0015979
Vifa1g01814 294 Pfam Thylakoid formation protein 69 273 IPR017499 GO:0010207|GO:0015979
Vifa1g01814 294 Hamap Protein Thf1 [thf1]. 63 271 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01814 Vifa-Chr1 295355884 295357756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01814 - - gmx:100814341 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01814 1 295355884 295357756 Vifa1g01814 1 295355884 295357756 ECH
Vifa1g01814 1 295355884 295357756 Vifa6g00192 6 81241896 81245230 PCT