Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04023 ATGGAAGAAAACAACAACAAAAAAACCCTTCTCTTCCTATTATTAGCTATCTCCTTCACACTCTCATCAACCACCACCATCACTCACTTCCAAACCCAAACTCTAACCATTAACTCTCTCCCAAAACCTTCAACTCTCTCATGGCCAGAACAATTTCTCTCCGACCACTCACAACCTCTCTCACAGGAAGAACTTCTCTCCGACCACTCAGAACCTCTCTCCCTTCAACTACACCACGTAGACTCACTCTCCTCCAACAAAACACCTCAACAACTCTTCCACCTCCGCCTCCAAAGAGACGCCGCCAGAGTCCAATCCTTCGCTCTCGCCACATCTCCCAACCAGTCTCGTCCCCTTAGATCCACCCCCGGTTTCAGCAGCTCCATCGTCTCTGGTCTTTCCCAAGGCAGCGGCGAGTATTTCACCCGCATAGGCGTAGGCACACCAGCAAAATACGTTTTCATGGTCCTCGACACCGGAAGTGACGTCGTTTGGCTTCAATGCGCTCCATGCCGTAAATGCTACTCTCAAGCAGATCCGGTTTTCGATCCAACAAAATCACACACCTTCGCCGGAATCCCATGCGGTGCTCCTCTCTGCCGGAGACTCGACTCCGCCGGATGCAACAATAAAAACAAAGTTTGTCAGTATCAGGTTTCTTACGGTGATGGTTCTTTCACTTTCGGTGATTTCTCAACCGAGACGCTGACGTTTCGGAAGACGCGTGTGACGCGCGTGGCTTTGGGATGTGGTCATGATAATGAAGGTCTATTCGTTGGTGCTGCTGGTTTATTGGGACTTGGGAGAGGAAGATTATCTTTCCCGGTTCAAACCGGTCGTCGCTTTAATCAGAAATTCTCTTATTGTCTTGTCGACCGCTCCGCTTCTGCTAAACCCTCCTCCATGGTTTTCGGCGATTCCGCCATTTCACGAACCGCCCGGTTTACTCCACTCATCAAAAACCCTAAACTCGATACTTTCTATTATATCGAACTTCTCGGAATCAGCGTTGGTGGTGCATCCGTTCGCGGCGTCTCCGCTTCTCTCTTCAAGCTCGATCCCGCCGGTAACGGCGGAGTTATAATCGATTCCGGCACTTCAGTTACGCGATTGACTCGTCCTGCATACATTGCTTTAAGAGATGCTTTCAGGCTTGGTGCTTCGCATCTGAAGAAGGCGCCGGAGTTCTCGCTGTTCGATACCTGCTTTGATTTGTCTGGTTTAACGGAGGTGAAGGTCCCGACGGTGGTGCTTCATTTCCGAGGTGCTGACGTGTCGCTTCCAGCTACTAATTACTTGATTCCGGTTGATAACAGTGGGAGCTTCTGCTTTGCTTTCGCCGGAACAATGAGTGGTTTGTCCATCATCGGTAACATCCAGCAGCAAGGGTTTCGGGTTGTTTATGATCTCGCGGGTTCTCGGGTCGGGTTTGCCCCGAGAGGGTGCGTGTGA 1452 0.5055 MEENNNKKTLLFLLLAISFTLSSTTTITHFQTQTLTINSLPKPSTLSWPEQFLSDHSQPLSQEELLSDHSEPLSLQLHHVDSLSSNKTPQQLFHLRLQRDAARVQSFALATSPNQSRPLRSTPGFSSSIVSGLSQGSGEYFTRIGVGTPAKYVFMVLDTGSDVVWLQCAPCRKCYSQADPVFDPTKSHTFAGIPCGAPLCRRLDSAGCNNKNKVCQYQVSYGDGSFTFGDFSTETLTFRKTRVTRVALGCGHDNEGLFVGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSMVFGDSAISRTARFTPLIKNPKLDTFYYIELLGISVGGASVRGVSASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRLGASHLKKAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAPRGCV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04023 483 Gene3D Acid Proteases 304 483 IPR021109 -
Vifa5g04023 483 ProSiteProfiles Peptidase family A1 domain profile. 140 478 IPR033121 -
Vifa5g04023 483 SUPERFAMILY Acid proteases 133 482 IPR021109 -
Vifa5g04023 483 CDD cnd41_like 139 482 IPR033873 -
Vifa5g04023 483 Gene3D Acid Proteases 121 303 IPR021109 -
Vifa5g04023 483 FunFam aspartyl protease family protein 2 117 304 - -
Vifa5g04023 483 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 155 166 IPR001969 GO:0004190|GO:0006508
Vifa5g04023 483 Pfam Xylanase inhibitor C-terminal 328 478 IPR032799 -
Vifa5g04023 483 PRINTS Pepsin (A1) aspartic protease family signature 454 469 IPR001461 GO:0004190|GO:0006508
Vifa5g04023 483 PRINTS Pepsin (A1) aspartic protease family signature 146 166 IPR001461 GO:0004190|GO:0006508
Vifa5g04023 483 PRINTS Pepsin (A1) aspartic protease family signature 360 371 IPR001461 GO:0004190|GO:0006508
Vifa5g04023 483 PANTHER ASPARTYL PROTEASES 30 476 IPR001461 GO:0004190|GO:0006508
Vifa5g04023 483 Pfam Xylanase inhibitor N-terminal 140 306 IPR032861 -
Vifa5g04023 483 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 360 371 IPR001969 GO:0004190|GO:0006508
Vifa5g04023 483 FunFam Aspartyl protease family protein 2 306 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04023 Vifa-Chr5 1279004928 1279006379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04023 115 482 Miscellaneous Gene Families AT1G77480 28.429 2.14e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04023 K22683 - gmx:100794269 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04023 5 1279004928 1279006379 Vifa4g01039 4 299414464 299415897 PCT