Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01039 ATGGAAGAGATGACACAAAGTGCTTTTCTCTTTTCCTTATTCTTTGCATTCCTACCAATCCCCTTCATTTCCTCATACCCTTTTGAGTTCCAAACCCACTCACTACTCCTCCATTCTCTCCCCCACCCACCACCAACACTCTCATGGCCCGAATCCGAATTCACAGAACACAACCCGGATACTTCCACCACCCTCTCTCTCCACCACATAGACGCTCTCTCCTTCAACAAAACCCCACAACAACTGTTCAACCTTAGACTCCAAAGAGACACTTCCAGAGTCAAAACATTCACCTCATTATTATCCTCATCTCTCAACCAAACCAAACCCGAACTATCCAGATCCGGTTCGAGTACAACCAGCCCCATAACATCGGGTTTCTCCCTAGGAAGCGGAGAGTACTTCACCCGCATAGGCGTTGGAACACCACCCAGATATGTTTACATGATCCTCGACACCGGAAGCGACGTCCTTTGGCTTCAATGTGCACCTTGCCAGAATTGCTACACACAATCCGACCCGGTTTTTGACCCGAAGAAATCAACCTCTTACACCCGAGTCCCATGTTCGTCTCCTCTCTGCCGCCAATTAGACTCGCCGGGATGTAACAGGAAGAAGATTTGCCAGTATGAAGTCTCATACGGCGACGGATCATTTACCGTCGGAGACTTCTCAACTGAAACACTGACGTTTCAGAGAACCAGTGTCCCCGGCGTCGCCATCGGTTGTGGTCACGACAACGAAGGACTCTTTAACGGCTCAGCTGGTTTATTCGGTCTCGGCCGTGGCGGTTTTTCTTTTCCAACCCAAACCGTTAACCGGTTCAACAAAAAATTCTCTTACTGCTTCGTAGACCGGTTCGCTTCGAGTAAACTATCTTCCGTAATTTTCGGCGAGAATTCCGTTCCGCGAACCGCTTTATTCACTCCTTTAATTCAAAACCCGAAACTACACTCTTTCTACTACATTGAACTTCTCGGAATCAGCGTTGGCGGCGCGCCGGTTCGTGGTATCACGGCTTCAATGTTCCGGCTCGATAAAACCGGAAACGGCGGTGTAATTATTGATTCTGGAACTTCAGTGACGCGGCTCACAACACCTGCTTACGTGGCATTTAGAAACGCGTTTCGGGTTGGAACTGGGTATTTGAAACGGGCACCCGAATTTGAGCTTTTTGATACGTGTTATAGTTTGTCGGGTTATAATGAGTTGAAAGTTCCGACGGTGGTGTTTCATTTTCGGGGTGCTGATGTCGCGTTACCGCCGGGGAATTTACTGATTCCGGTGGATAGTAATAATAAAACATTTTGTTTTGCTTTTGCTGGAACGGTGAATGGGTTGTCTATTATAGGGAATATTCAGCAACAAGGGTTTCAGGTTGTGTATGATTTGGCAGGTTCTCGGGTCGGGTTTGCACCGCAAGGATGCGCGTGA 1434 0.4805 MEEMTQSAFLFSLFFAFLPIPFISSYPFEFQTHSLLLHSLPHPPPTLSWPESEFTEHNPDTSTTLSLHHIDALSFNKTPQQLFNLRLQRDTSRVKTFTSLLSSSLNQTKPELSRSGSSTTSPITSGFSLGSGEYFTRIGVGTPPRYVYMILDTGSDVLWLQCAPCQNCYTQSDPVFDPKKSTSYTRVPCSSPLCRQLDSPGCNRKKICQYEVSYGDGSFTVGDFSTETLTFQRTSVPGVAIGCGHDNEGLFNGSAGLFGLGRGGFSFPTQTVNRFNKKFSYCFVDRFASSKLSSVIFGENSVPRTALFTPLIQNPKLHSFYYIELLGISVGGAPVRGITASMFRLDKTGNGGVIIDSGTSVTRLTTPAYVAFRNAFRVGTGYLKRAPEFELFDTCYSLSGYNELKVPTVVFHFRGADVALPPGNLLIPVDSNNKTFCFAFAGTVNGLSIIGNIQQQGFQVVYDLAGSRVGFAPQGCA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01039 477 Gene3D Acid Proteases 106 298 IPR021109 -
Vifa4g01039 477 PANTHER ASPARTYL PROTEASES 55 470 IPR001461 GO:0004190|GO:0006508
Vifa4g01039 477 Pfam Xylanase inhibitor N-terminal 134 298 IPR032861 -
Vifa4g01039 477 PRINTS Pepsin (A1) aspartic protease family signature 448 463 IPR001461 GO:0004190|GO:0006508
Vifa4g01039 477 PRINTS Pepsin (A1) aspartic protease family signature 353 364 IPR001461 GO:0004190|GO:0006508
Vifa4g01039 477 PRINTS Pepsin (A1) aspartic protease family signature 140 160 IPR001461 GO:0004190|GO:0006508
Vifa4g01039 477 CDD cnd41_like 133 476 IPR033873 -
Vifa4g01039 477 FunFam Probable aspartic protease At2g35615 113 298 - -
Vifa4g01039 477 FunFam Aspartyl protease family protein 2 299 476 - -
Vifa4g01039 477 SUPERFAMILY Acid proteases 128 476 IPR021109 -
Vifa4g01039 477 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 149 160 IPR001969 GO:0004190|GO:0006508
Vifa4g01039 477 Gene3D Acid Proteases 299 477 IPR021109 -
Vifa4g01039 477 ProSiteProfiles Peptidase family A1 domain profile. 134 472 IPR033121 -
Vifa4g01039 477 Pfam Xylanase inhibitor C-terminal 321 472 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01039 Vifa-Chr4 299414464 299415897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01039 112 476 Miscellaneous Gene Families AT1G44130 28.643 6.26e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01039 K22683 - gmx:100791511 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01039 4 299414464 299415897 Vifa4g01039 4 299414464 299415897 ECH
Vifa5g04023 5 1279004928 1279006379 Vifa4g01039 4 299414464 299415897 PCT