Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03841 ATGCTCGTTCAAAACAACAACATCCAATTCCCCACCACCAGTTTTACTCAACACCATAGGATTGAATCCTCAAGACCTCTTCTATTCCGAGGAAATGCCGAATCGCAACAGCGTGATTCCGATGATGACGAAGGACAGAAGCAGAAGCAGAATGCAACTTCTTCTGTACCATCACCGGCTCTCACACTTACCACTCTTGTAGCGGTTTTTGGCTCTTACGTTTTCGGAACCGCTGTCGGGTATTCGTCCCCTACTCAATCTAGAATCATGATTGACCTCAATCTCGGTGTTGCACAGTTTTCGATTTTCGGTTCAATTTTGACAATTGGAGCCATGATTGGTGCTATTGTTAGTGGTACAATAGCAGATTACGCTGGTCGACGGATTGCTATGGGATTCTCACAGCTATTCTGTATTTTGGGATGGCTTGCCATAACAATCGCAGAGGATGCTTGGTGGCTTTACATTGGAAGAGTGTTGGTAGGATCTGGGATTGGCCTGCTATCTTATGTGGTACCAGTTTATATAGCAGAAATAACACCAAAGAATCTTAGAGGCCGATTCACTGCACTTCATCAGTTAATGATTAGCTGTGGGATGTCATTAACTTATCTTATTGGAGCATTTGTACATTGGCGGATTTTGGCTCTAATAGGAGTTGTTCCTTGTCTTATACAGCTTCTCGGTCTTCCCTTTATCCCGGATTCTCCTAGGTGGCTGGCAAAGGTCGGCCGCTGGAAGGAGAGTGATTCTTCTTTACAGCGCCTTAGAGGAAAAAATGTTGATGTTTATAAAGAGGCCAATGAAATCAGAGATTATACCGACACCCTTCAGCAACAAACAGAGGCTAGCATTATTGGCTTATTTCAATTGCAATATTTGAAGTCACTTACAGTAGGACTCGGCTTGATGATACTACAACAGTTTGGAGGGATTAATAGCATTGTTTTCTACGCAAATTCTATATTTACCTCTGCTGGGTTCTCGGAGAGTATAGGAACAATAGCAATGGTTGCTGTTAAGATTCCAATGACAATTTTAGGAGTATTTTTGCTGGATAAATCTGGAAGGCGACCACTTTTACTGTTGTCTGCAGTGGGAACTTGCTTAGGATGCTTCCTCGTAGCCCTGTCATTCTTCTTGCAGGACATACATAAATGGAAGGAAGTCAGTCCTATTCTGGCGCTTGTTGGTGTACTGATCTATGTCGGATTTTTCTCGCTAGGCATGGGGGCAATTCCATGGGTTATAATGTCTGAGATATTTCCTATTAACGTGAAAGGCTCTGCTGGAAGCTTAGTAACATTGGTTAACTGGTTGTGTTCTTGGATTGTATCATATGCTTTTAACTTCCTCATGACTTGGAGTTCAACAGGAACTTTTCTTGGATTTGCAGTTGTATGCGGCTTCAATGTTATATTCATAGCAAAAGTAGTTCCTGAAACCAAAGGACGTACACTAGAAGAAATTCAAGCTTCTTTGAATTCAAATTCAACAAAGAGATGA 1506 0.4197 MLVQNNNIQFPTTSFTQHHRIESSRPLLFRGNAESQQRDSDDDEGQKQKQNATSSVPSPALTLTTLVAVFGSYVFGTAVGYSSPTQSRIMIDLNLGVAQFSIFGSILTIGAMIGAIVSGTIADYAGRRIAMGFSQLFCILGWLAITIAEDAWWLYIGRVLVGSGIGLLSYVVPVYIAEITPKNLRGRFTALHQLMISCGMSLTYLIGAFVHWRILALIGVVPCLIQLLGLPFIPDSPRWLAKVGRWKESDSSLQRLRGKNVDVYKEANEIRDYTDTLQQQTEASIIGLFQLQYLKSLTVGLGLMILQQFGGINSIVFYANSIFTSAGFSESIGTIAMVAVKIPMTILGVFLLDKSGRRPLLLLSAVGTCLGCFLVALSFFLQDIHKWKEVSPILALVGVLIYVGFFSLGMGAIPWVIMSEIFPINVKGSAGSLVTLVNWLCSWIVSYAFNFLMTWSSTGTFLGFAVVCGFNVIFIAKVVPETKGRTLEEIQASLNSNSTKR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03841 501 FunFam sugar transporter ERD6-like 6 56 494 - -
Vifa5g03841 501 Pfam Sugar (and other) transporter 97 492 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 ProSitePatterns Sugar transport proteins signature 1. 118 134 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 PRINTS Sugar transporter signature 72 82 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 PRINTS Sugar transporter signature 155 174 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 PRINTS Sugar transporter signature 396 417 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 PRINTS Sugar transporter signature 307 317 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 PRINTS Sugar transporter signature 419 431 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 SUPERFAMILY MFS general substrate transporter 65 491 IPR036259 -
Vifa5g03841 501 Gene3D MFS general substrate transporter like domains 54 497 IPR036259 -
Vifa5g03841 501 PANTHER - 50 491 - -
Vifa5g03841 501 NCBIfam sugar porter family MFS transporter 52 490 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g03841 501 CDD MFS_GLUT6_8_Class3_like 63 489 IPR044775 GO:0008643|GO:0051119
Vifa5g03841 501 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 483 IPR020846 GO:0022857
Vifa5g03841 501 MobiDBLite consensus disorder prediction 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03841 Vifa-Chr5 1232128820 1232133318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03841 30 425 Organic Solute Cotransporters AT1G54730 61.111 4.15e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03841 K03444 - tpra:123890865 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02503 5 830123653 830127003 Vifa5g03841 5 1232128820 1232133318 ECH
Vifa5g03841 5 1232128820 1232133318 Vifa5g03841 5 1232128820 1232133318 ECH