Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02503 ATGAGGATGGAAATGAAAGAGGATGTTGAGGGTGGTAAGCAGAGAGGAGTAAGAGAAGCATTGTTAGGGGAAAACAGCAAACAACTTGTGAATGAAACCAAACATCATGATCATCCATGGATGGTTTACTTCACCACATTCATTGCTGTTTGTGGTTCTTATGAATTTGGTGCTTGTATTGGATATTCATCTCCAACTCAAGAAGCTATAAGGAAGGATCTAAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCAATGATTGGTGCGATAACAAGTGGTCCTATTGCTGACTTCGTTGGTCGAAAGGGGGCAATGAGAGTATCGAGTGCTTTCTGCATTGCAGGATGGCTTGTTATTTATTTTTCAAAGGGTCCAGTTCCTTTGAATATTGGGAGACTAGCAACAGGATATGGAATGGGAGTCTTTTCATTCGTGGTTCCTGTCTTCGTAGCAGAAATTGCGCCAAAAGAACTCCGAGGAGCCCTCACTACCATAAATCAGCTTATGATTATTACTGCTGTATCGGTTTCATTCATAATCGGAACAGTACTTTCCTGGAGAGCTTTAGCAATAATTGGCCTGATTCCTACTGCTGTGTTGCTTTTCGGTCTGTTCTTCATTCCAGAGTCTCCTAGATGGCTTGCAAAGAAAGGGTGCGCAAAAGATTTTGTGGCAGCATTGCAAATACTTCGCGGTAAAGATGCTGATATATCTCAAGAAGCAGCAGAAATTCAGGATTATATAACTAGTTTAGAACTTCTCGCAAAACCGAAGATGTTGGATTTGTTTCAAAGAAGATATTTGCGCTCGCTTACGATTGGCATAGGGCTTATGATTTGCCAGCAATTTGGGGGAATCAATGGAGTTTCCTTTTATACTAGCAGTATTTTTGATCTAGCAGGATTTCCGTCTGCGACCGGGACTATAATTTATGCTATTCTTCAGATTATAATAACAGGTGTTGGAGCAGCCCTCATAGATAAAGCTGGAAGGAAGCCCCTACTTTTGGTGTCTGGATCGGGATTGGTTGCAGGATGTATATTTACAGCAGTTGCATTCTATCTTAAGGTTCATAATGTGGGCTTAGGGGCAGTCCCAACACTTGCTGTAATCGGCATACTCGTCTACATAGGATCGTTTTCAATAGGAATGGGAGCAGTTCCATGGGTCATGATGTCTGAGATATTTCCTGTGAATATTAAAGGACAGGCGGGAAGCATAGCCACATTAGTGAACTGGTTTGCTGCGTGGCTATGTTCCTATACTTTCAACTTTTTCATGAGTTGGAGCTCCTATGGTACCTTCATTCTTTATGCTGCAATCAATGCACTAGCTATATTGTTTATAGTTGTAGTCGTTCCAGAAACCAAAGGTAAAAGCCTTGAACAATTACAGGCCGCCATTAACGCATAA 1434 0.417 MRMEMKEDVEGGKQRGVREALLGENSKQLVNETKHHDHPWMVYFTTFIAVCGSYEFGACIGYSSPTQEAIRKDLSLSLAEYSLFGSILTFGAMIGAITSGPIADFVGRKGAMRVSSAFCIAGWLVIYFSKGPVPLNIGRLATGYGMGVFSFVVPVFVAEIAPKELRGALTTINQLMIITAVSVSFIIGTVLSWRALAIIGLIPTAVLLFGLFFIPESPRWLAKKGCAKDFVAALQILRGKDADISQEAAEIQDYITSLELLAKPKMLDLFQRRYLRSLTIGIGLMICQQFGGINGVSFYTSSIFDLAGFPSATGTIIYAILQIIITGVGAALIDKAGRKPLLLVSGSGLVAGCIFTAVAFYLKVHNVGLGAVPTLAVIGILVYIGSFSIGMGAVPWVMMSEIFPVNIKGQAGSIATLVNWFAAWLCSYTFNFFMSWSSYGTFILYAAINALAILFIVVVVPETKGKSLEQLQAAINA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02503 477 CDD MFS_GLUT6_8_Class3_like 43 470 IPR044775 GO:0008643|GO:0051119
Vifa5g02503 477 ProSitePatterns Sugar transport proteins signature 1. 99 116 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 ProSitePatterns Sugar transport proteins signature 1. 329 346 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 FunFam sugar transporter ERD6-like 6 36 475 - -
Vifa5g02503 477 Gene3D MFS general substrate transporter like domains 35 476 IPR036259 -
Vifa5g02503 477 NCBIfam sugar porter family MFS transporter 20 470 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 PANTHER - 35 472 - -
Vifa5g02503 477 ProSiteProfiles Major facilitator superfamily (MFS) profile. 45 464 IPR020846 GO:0022857
Vifa5g02503 477 Pfam Sugar (and other) transporter 69 473 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 PRINTS Sugar transporter signature 288 298 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 PRINTS Sugar transporter signature 136 155 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa5g02503 477 SUPERFAMILY MFS general substrate transporter 38 471 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02503 Vifa-Chr5 830123653 830127003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02503 1 476 Organic Solute Cotransporters AT5G18840 56.757 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02503 K03444 - gmx:100785248 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02503 5 830123653 830127003 Vifa5g03841 5 1232128820 1232133318 ECH
Vifa5g02503 5 830123653 830127003 Vifa5g02503 5 830123653 830127003 ECH
Vifa5g02503 5 830123653 830127003 Vifa5g03837 5 1231776804 1231777640 ECH