Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03687 ATGACCGCAATCAACCTTATTTGTAATTGTACCATGAAACCTTCCTCTAGATTTCTCGTAATTGGTAGAAAGAAATCATCTTTTCTCTCAAGATGTCACCACCATTCTCTTACAATGTCTAATAAACCTCTTGTTCTTAATCTTAATCACAAAACCACGCACTACCCTTCTTGTATATTTGAATTTGGACGCCTAATGAACGGTTTTCAACAAGTTTTACGGTTACCTTCTTGGAATTTGTGCCATTCAAGAACATGTATCAGAATAAGAGCAACCAAAACAGAAAGAGTTTCTTGTATTGATGGAGTGTCCTTCAAGGCACGTGAATTCTCGAACTCGGTCGAGACTAAGGGTAGAGGAGATGAAGGGGATTTGAAGGAGAAGAAGAATTGTGATGGTTTGAAGATTTGTGATGAGGAAGAAACAGATGTGGAGAAAGAGGCATGGAAATTGTTGCAAAAAGCACTTGTTACATATTGTGATACACCTGTTGGAACCGTTGCAGCAAAGGATGAATCGGATAAAGACTCACCTTTGAATTATGATCAGGTTTTTATCAGAGATTTTGTCCCTTCTGCTCTTGCTTTCTTGCTCAAAGGAGAAAAAGAGATTGTCAAGAACTTTCTCCTTTACACCTTGCAACTCCAGAGTTGGGAGAAAACAGTGGATTGCTATAGCCCCGGACAAGGCTTGATGCCTGCAAGTTTCAAAGTTAAAACAATGGAATTTGATGACAAAAAGACAAGAGACGTTTTAGATCCTGATTTCGGAGAATCAGCTATTGGTCGCGTTGCTCCGGTCGATTCAGGATTATGGTGGATCATTCTACTTAGGGCTTATGGAAAACTCACCGGTGATTACACCTTGCAAGAAAAGTTAGAAGTTCAAACAGGCTTACAAATGATCCTTAACTTGTGTTTATCAGATGGATTTGACATGTTTCCTTCTCTATTAGTAACTGATGGATCATGCATGATAGATAGAAGGATGGGTATTCATGGCCACCCTCTTGAGATTCAAGCATTATTTTACTCGGCTCTTCGCTCGGCTCGCGAAATGGTCGTCATAAACGATGAACATAGTAATCTGATTGGTGAAATCAACAATAGACTAAGTGCATTGTCTTTTCACATTAGAGAGTATTATTGGTTGGATATGAGAAAGGTGAATGAAATATATAGGTATAAAACAGAAGAGTACTCTTTAGATGCAATTAACAAGTTCAACATTTATCCAGAACAAATTCCAATGTGGTTAATGGATTGGGTTCCAGAAGAAGGTGGTTATTTGATAGGAAATCTACAACCTGCTCACATGGATTTTAGGTTTTTCATGCTTGGAAATCTTTGGTCTATTGTTTCGTCTTTAGGTACACCGAGACAGAACAGGTCTATTTTGAATCTTATAGAATCGAAATGGGATGATCTTGTTGGTGAAATGCCTCTTAAGATATGTTATCCTGCTTTGGAACATGAAGAATGGCGCTTAATCACCGGCAGCGACCCTAAGAATACCCCTTGGTCATATCACAATGGCGGATCTTGGCCTACCCTGATGTGGCAGTTTACGTTGGCCTGCATCAAAATGGGAAGAACTGATTTAGCAGAAAAGGCGGTTGGTTTGGCAGAGAAAAGGCTTCCGTTTGATTCTTGGCCGGAATACTATGACACGAAAACAGGAAGATTTGTTGGAAAACAAGCTAGACTTTATCAAACATGGACATTAGCAGGGTTTCTTGCATCTAAGATGCTTTTGAAGCACCCTGAAGTAGCATCATTGTTATGTTGGGATGAAGATCTTGATATTCTCGAAACATGTGTTTGTGTACTAAATAAGAGTGGTAGGACAAAATGTTCTCGTGATGTTGCAAAGTCACACATTTTAGTGTGA 1890 0.3915 MTAINLICNCTMKPSSRFLVIGRKKSSFLSRCHHHSLTMSNKPLVLNLNHKTTHYPSCIFEFGRLMNGFQQVLRLPSWNLCHSRTCIRIRATKTERVSCIDGVSFKAREFSNSVETKGRGDEGDLKEKKNCDGLKICDEEETDVEKEAWKLLQKALVTYCDTPVGTVAAKDESDKDSPLNYDQVFIRDFVPSALAFLLKGEKEIVKNFLLYTLQLQSWEKTVDCYSPGQGLMPASFKVKTMEFDDKKTRDVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKLTGDYTLQEKLEVQTGLQMILNLCLSDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSAREMVVINDEHSNLIGEINNRLSALSFHIREYYWLDMRKVNEIYRYKTEEYSLDAINKFNIYPEQIPMWLMDWVPEEGGYLIGNLQPAHMDFRFFMLGNLWSIVSSLGTPRQNRSILNLIESKWDDLVGEMPLKICYPALEHEEWRLITGSDPKNTPWSYHNGGSWPTLMWQFTLACIKMGRTDLAEKAVGLAEKRLPFDSWPEYYDTKTGRFVGKQARLYQTWTLAGFLASKMLLKHPEVASLLCWDEDLDILETCVCVLNKSGRTKCSRDVAKSHILV 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03687 629 SUPERFAMILY Six-hairpin glycosidases 147 580 IPR008928 GO:0005975
Vifa5g03687 629 PANTHER - 124 612 IPR024746 GO:0033926
Vifa5g03687 629 FunFam probable alkaline/neutral invertase B 175 581 - -
Vifa5g03687 629 Gene3D - 179 578 IPR012341 GO:0005975
Vifa5g03687 629 Pfam Alkaline and neutral invertase 148 588 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03687 Vifa-Chr5 1185697537 1185700272 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03687 - - gmx:100812691 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03687 5 1185697537 1185700272 Vifa3g02031 3 505740187 505745845 ECH
Vifa5g03687 5 1185697537 1185700272 Vifa5g03687 5 1185697537 1185700272 ECH
Vifa5g03687 5 1185697537 1185700272 Vifa3g02031 3 505740187 505745845 PCT