Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03658 ATGACAAATCTAGCTTCATTTTGCCTCTTGTTCTTCTCTTTTCTCACTCTCTTTGCAGGAAACAATGCATTATCATCTTTTTCCACAACAAAATTCATTCAAAAAAGCAAGATCTCAAATTCTCAGATTCAGTTTTTTGCAACTAGGAGAACTCTACAAGACACAAATCCAGCATCAACTTCACCAACAATCATCACTGTTCCTTCAACAAATCCAGGTGCTACAAATCTTGTCCCTTCCACCACACCACCAGTTTCAACAGCACCACCAACAAATCCAGCAAACTCACCAGTTCCTGTTACAAATCCTGTTACATCTCCTATAACAGTTCCCGGAACTGTTCCTGTGAGTTCTTATCCACCACCTTCACCATTATCAGGAACTGTTCCTGTTCCTGTTACAAATTCTCCTCCTTCTTCAAACATCAACCCTCCTCCATCTTCATCTTCATCTTCTCAAGGAGGTGGTGGTGGTAGCTGGTGTGTGGCTAAACCTGGAGTTTCACAAACTACACTTCAAACTGCATTGGATTATGCTTGTGGAACTAATGGTGCTGATTGTTCACAAATACAACAAGGTGGAATTTGTTATAACCCAAATTCACTTCAAAATCATGCTTCTTTTGCTTTCAATAGCTACTACGTAAAGAATCCTGCTCCAACTAGCTGTGACTTTGGAGGGGTTGCTACCATTGTTACCACCAATCCTAGTTCTGGTACTTGCATCTTTCCATCATCTTCAGGAGGAGGAGCTGGCTCATCCGGCTCTGGTTCTAACTCGCCTTCAATAGGTTTTGGTGGTCCTGCAACCTCTCCGGATTCCTCTCATTCAACTGGTCTGAGGCCTTTGCTAAGAAGTTTCATGATTCTGATGACATTATTGGCCTGCGGAACACTTGCTATGAGTCCATAG 912 0.4232 MTNLASFCLLFFSFLTLFAGNNALSSFSTTKFIQKSKISNSQIQFFATRRTLQDTNPASTSPTIITVPSTNPGATNLVPSTTPPVSTAPPTNPANSPVPVTNPVTSPITVPGTVPVSSYPPPSPLSGTVPVPVTNSPPSSNINPPPSSSSSSQGGGGGSWCVAKPGVSQTTLQTALDYACGTNGADCSQIQQGGICYNPNSLQNHASFAFNSYYVKNPAPTSCDFGGVATIVTTNPSSGTCIFPSSSGGGAGSSGSGSNSPSIGFGGPATSPDSSHSTGLRPLLRSFMILMTLLACGTLAMSP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03658 303 PANTHER BETA-1,3 GLUCANASE 67 254 IPR044788 -
Vifa5g03658 303 Pfam X8 domain 160 230 IPR012946 -
Vifa5g03658 303 FunFam Glucan endo-1,3-beta-glucosidase 4 155 247 - -
Vifa5g03658 303 SMART X8_cls 159 243 IPR012946 -
Vifa5g03658 303 MobiDBLite consensus disorder prediction 252 277 - -
Vifa5g03658 303 MobiDBLite consensus disorder prediction 54 82 - -
Vifa5g03658 303 MobiDBLite consensus disorder prediction 83 97 - -
Vifa5g03658 303 MobiDBLite consensus disorder prediction 119 160 - -
Vifa5g03658 303 Gene3D - 157 247 - -
Vifa5g03658 303 MobiDBLite consensus disorder prediction 54 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03658 Vifa-Chr5 1179757741 1179758947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03658 157 245 Glycoside Hydrolase AT4G26830 54.444 8.29e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03658 - - psat:127132491 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03658 5 1179757741 1179758947 Vifa5g03658 5 1179757741 1179758947 ECH
Vifa5g03658 5 1179757741 1179758947 Vifa3g02040 3 506981802 506984018 PCT