Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02040 ATGGCTAAGGAAGCTTCTTTCTGCCTCTTGTTTCTCTCTTCTCTCTTAATTTCATGTTCTGGATCTTTGGTGGGTTTTTCCTATCATGAGAGAGGAGACACTTGGAAATCTTATCTTCAGCCGAGCAAAGTTTCTTCATCTCAGATTCGAGTTTTCGTCACAGATTATAGAATTCCGAGCACTCTTACCAACTCAAACATAGATCTACACATAGGTAAGGAAGTAAAAGTCTCAGTAGCATTTCCACTTCAATTCTTAAGGAAGTTGAATCCATCACAAGAACATGGAATTCGTAAGCTGCTTTCTCTTATAAAGGAAACAAAATCGTCTGTGATGATAGAAGACAACATTGATGAAGAATTAAGCGCGGAGGATCATTTTGTTCAAACGGTTATCAAGCGAGCCGCTCTTGCTGCTTCTGTTCTTCCTTGCAAAGATGCTTCTGTGATTCTAACAATCAAGAGTTCAGTTATACCAAGTTCCGTGGAATTAGCCGAATTTAGTAAAAGAGTATCAAAATATTTAGCAGCGAGAAGACATACTGCAAAAAGAATAGCTGCATTATATGTAGAACTGTATACAGCAGAAGATTTTTCAATGAAAGAGCTCAAAAGGGAGGAAGAGAGAGAAAATTTTCCATTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAAAACACTAGATAACACAAACAGTCCAACAAACACAGTTTACCCTACGAATCCAACACCAGTGATCACACCCTCAGATACACCAACTATTATAGCAGTTCCTTCCACAAATCCTGTCACGATTTCCCCTACAAATCCAGCTGCAATGCCTGTAACAGTTCCTTCTACTACACCTGCCGTTCCTTCTACTACACCTGCTGTTCCTTTACCTCCAACAAATCCAACCAATTCACCAGTTCCGGTCTTCAACCCAGCTACAACACCTTCAACAGTCCCAGGTGCACAACCAGTAACCAACCCTGTAACGTCTTATCCACCTCCATCGGGAAATGTTCCTGTCCCTGTCATAAACCCTCCTTCAAACACAAATGCTCCTTCCATTCAGGGACAGAGTTGGTGTGTGGCAAAAGCAGGCGCTCTGCAAGCCTCCCTTCAATCAGCATTGGATTATGCTTGTGGAATGGGTGCTGATTGTTCTCAGATACAGCAGGGTGGGGCTTGTTACAGTCCAGTCACTTTGCAGAGTCATGCTTCTTTTGCTTTCAATAGTTACTATCAAAAGAATCCAGCTCCAACAAGTTGCGACTTCGGAGGCGCTGCCACCTTAATTAACACAAATCCAAGTTCTGGTTCATGCATTTTTCCATCATTGTCGTCGTCATCATCCTCAACGCCAATGATATCATCCCCAACACCTCCTACACAATCAACTCCAACTTCAATACCGCCACCAAGTCCAATAACAACTGCACCATCTATTACAACAATAGCTCCACCATCTATTCCAACAATAGCTCCACCATCAATTCAAACAGCTCCATCATCAATTCCAACAGCTCCACCAACATCTTCAGGATCGGGAACAGGCACTTTCGGCTATGGTACCCCACCTTCAGTGTTAAATTCAAGCAGCCCAGATTCAGGTACAGTACCAGATTTTGGGTCCGATAGCCCTCCTGTTGTAAACACAACGTCTGCCTCACACCCTCGAGCTCTAAAATCTTTTACTGGCTACATAATTTTGATGATTCCATTCGTCACCGCCAGACTCAGCATGCTCCCATAG 1743 0.428 MAKEASFCLLFLSSLLISCSGSLVGFSYHERGDTWKSYLQPSKVSSSQIRVFVTDYRIPSTLTNSNIDLHIGKEVKVSVAFPLQFLRKLNPSQEHGIRKLLSLIKETKSSVMIEDNIDEELSAEDHFVQTVIKRAALAASVLPCKDASVILTIKSSVIPSSVELAEFSKRVSKYLAARRHTAKRIAALYVELYTAEDFSMKELKREEERENFPLSRREILSKFHRRKTLDNTNSPTNTVYPTNPTPVITPSDTPTIIAVPSTNPVTISPTNPAAMPVTVPSTTPAVPSTTPAVPLPPTNPTNSPVPVFNPATTPSTVPGAQPVTNPVTSYPPPSGNVPVPVINPPSNTNAPSIQGQSWCVAKAGALQASLQSALDYACGMGADCSQIQQGGACYSPVTLQSHASFAFNSYYQKNPAPTSCDFGGAATLINTNPSSGSCIFPSLSSSSSSTPMISSPTPPTQSTPTSIPPPSPITTAPSITTIAPPSIPTIAPPSIQTAPSSIPTAPPTSSGSGTGTFGYGTPPSVLNSSSPDSGTVPDFGSDSPPVVNTTSASHPRALKSFTGYIILMIPFVTARLSMLP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02040 580 MobiDBLite consensus disorder prediction 493 552 - -
Vifa3g02040 580 MobiDBLite consensus disorder prediction 228 249 - -
Vifa3g02040 580 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vifa3g02040 580 SMART X8_cls 357 440 IPR012946 -
Vifa3g02040 580 MobiDBLite consensus disorder prediction 447 552 - -
Vifa3g02040 580 MobiDBLite consensus disorder prediction 230 249 - -
Vifa3g02040 580 PANTHER BETA-1,3 GLUCANASE 353 456 IPR044788 -
Vifa3g02040 580 Pfam X8 domain 358 427 IPR012946 -
Vifa3g02040 580 Gene3D - 352 452 - -
Vifa3g02040 580 MobiDBLite consensus disorder prediction 457 475 - -
Vifa3g02040 580 FunFam Glucan endo-1,3-beta-glucosidase 4 352 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02040 Vifa-Chr3 506981802 506984018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02040 322 442 Glycoside Hydrolase AT2G05790 48.438 9.81e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02040 - - tpra:123886415 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02040 3 506981802 506984018 Vifa3g02040 3 506981802 506984018 ECH
Vifa5g03658 5 1179757741 1179758947 Vifa3g02040 3 506981802 506984018 PCT