Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03576 ATGGCACCGGAAATCGTTCAAAACGCGGTCAAACCAGTTACCCGATTCACGAAACCGAAACCCGTGCTTCCTGACGTACCGGAGGAGCACCGTGAGATGTTGGAATCTCAGGGATGTATCGTCCGGGAAATCGAACCGGTTTACCCACCGGAAAATCAGACTCAGTTTGCTATGGCTTATTACGTCGTCAACTATTCCAAACTCCGTATATGGGAGTTTGTGGAGTATAGCAAGATGATATATTTGGATGGAGACATACAAGTATATGAAAACATAGATCATCTTTTTGATCTACCAGACGTGTCCGAGAAGGTGCAATGGCCGAAAGAAATGGGTCAACCTCCTTCACTTTACTTCAATGCTGGCATGTTTCTGTTTGAGCCTAGTGTTGAGACTTATGATGATCTTTTGAAAACTTGTCAAGTTACTGCTCCTACTCCGTTTGCAGAACAAGATTTTTTGAACATGTATTTTAAGGATGTTTATAGGCCAATTCCTTTGGTTTATAATCTTGTTCTTGCTATGTTGTGGCGTCATCCGGAGAATATTGAGGTTCGGAAAGTCAAGGTTGTTCACTATTGTGCAGCGGGTTCAAAGCCTTGGAGGTATACAGGGAAGGAAGATAATATGCAGAGGGAAGATATAAAGATGTTGGTGCAGAAATGGTGGGATATATACAATGATTCTTCACTTGACTACAAGAAGAATTTGAGTGGAAATAGTGACACACAAAAGAATGATGTTGAAGAGCCATTTGTACAGGCTTTATCGGAGGTTGGTCGTGTTCGATACGTCACAGCACCTTCAGCAGCTTAA 816 0.4228 MAPEIVQNAVKPVTRFTKPKPVLPDVPEEHREMLESQGCIVREIEPVYPPENQTQFAMAYYVVNYSKLRIWEFVEYSKMIYLDGDIQVYENIDHLFDLPDVSEKVQWPKEMGQPPSLYFNAGMFLFEPSVETYDDLLKTCQVTAPTPFAEQDFLNMYFKDVYRPIPLVYNLVLAMLWRHPENIEVRKVKVVHYCAAGSKPWRYTGKEDNMQREDIKMLVQKWWDIYNDSSLDYKKNLSGNSDTQKNDVEEPFVQALSEVGRVRYVTAPSAA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03576 271 SUPERFAMILY Nucleotide-diphospho-sugar transferases 23 234 IPR029044 -
Vifa5g03576 271 PANTHER GLYCOGENIN SUBFAMILY MEMBER 23 249 - -
Vifa5g03576 271 Pfam Glycosyl transferase family 8 4 204 IPR002495 GO:0016757
Vifa5g03576 271 CDD GT8_Glycogenin 22 229 - -
Vifa5g03576 271 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 21 232 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03576 Vifa-Chr5 1162753198 1162754491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03576 22 271 Glycosyltransferase AT1G56600 63.799 2.65e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03576 K18819 - gmx:100819991 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03576 5 1162753198 1162754491 Vifa5g03576 5 1162753198 1162754491 ECH
Vifa5g03576 5 1162753198 1162754491 Vifa3g02033 3 506081394 506082659 ECH