Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02033 ATGTCTCCAGATATCGTAGCCGCCGCAACCAACATCAGTGACGCACAATCCAAGACCGCGAAACGTGCCTTTGTCACGTTCCTTGCCGGAAACGGTGACTACGTCAAAGGTGTTGTTGGTTTGGCCAAAGGTCTCCGTAAGGTTGGAACCATGTACCCTCTTGTGGTTGCAGTGTTGCCTGATGTTCCGGCGGAACACCGGAATATTCTCATCTCACAAGGTTGCATTGTCAGAGAGATAGAACCTGTTTACCCACCTGAGAACCAAACACAGTTTGCTATGGCTTATTATGTCATCAACTACTCCAAGCTACGTATTTGGGCCTTTGAGGAATATGAGAAGATGATTTACCTTGATGGTGATATACAAGTTTTTGAAAACATTGATCATTTATTTGAGTTGCCAAATAACTATTTCTATGCTGTGATGGATTGTTTTTGTGAGGCCACATGGGGTCATACTAAGCAATATGAAATCGGTTACTGTCAACAATGTCCTGACAAGGTTCAATGGCCTATTAATTTTGGTCCCAAACCACCTCTTTACTTCAATGCCGGCATGTTTGTTTATGAACCTAATATGGATACTTATCATGATCTTCTTCAAAAACTTCAAGTTACTAAACCAACTTCCTTTGCTGAACAGGATTTTTTGAACATGTACTTCAATGACAAATATAAGCCAATTCCTAATGTTTACAATCTTGTGCTGGCTATGCTGTGGCGTCACCCTGAGAATGTTGAACTTGAGAAAGTTAAAGTTGTTCATTACTGTGCTGCTGGTTCAAAGCCTTGGAGGTACACTGGTGTGGAGCAGAATATGCAGAGAGAAGATATAAAGATGTTGGTGAAGAAGTGGTGGGAGGTGTATGAAGATGAGAGTTTGGATTACAAGGAAGCGATTAATGCTAATCGCTTAACATCAGCAATTTTGGAAGCTGGTGGTATCAACTTTGTCCGCGCTCCAAACGCTGCTTAA 978 0.4182 MSPDIVAAATNISDAQSKTAKRAFVTFLAGNGDYVKGVVGLAKGLRKVGTMYPLVVAVLPDVPAEHRNILISQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWAFEEYEKMIYLDGDIQVFENIDHLFELPNNYFYAVMDCFCEATWGHTKQYEIGYCQQCPDKVQWPINFGPKPPLYFNAGMFVYEPNMDTYHDLLQKLQVTKPTSFAEQDFLNMYFNDKYKPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGVEQNMQREDIKMLVKKWWEVYEDESLDYKEAINANRLTSAILEAGGINFVRAPNAA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02033 325 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 19 299 IPR029044 -
Vifa3g02033 325 SUPERFAMILY Nucleotide-diphospho-sugar transferases 25 298 IPR029044 -
Vifa3g02033 325 Pfam Glycosyl transferase family 8 26 268 IPR002495 GO:0016757
Vifa3g02033 325 PANTHER GLYCOGENIN SUBFAMILY MEMBER 11 294 - -
Vifa3g02033 325 FunFam Hexosyltransferase 20 298 - -
Vifa3g02033 325 CDD GT8_Glycogenin 22 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02033 Vifa-Chr3 506081394 506082659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02033 1 325 Glycosyltransferase AT1G56600 70.149 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02033 K18819 - gmx:548050 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02033 3 506081394 506082659 Vifa3g02033 3 506081394 506082659 ECH
Vifa5g03576 5 1162753198 1162754491 Vifa3g02033 3 506081394 506082659 ECH