Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03530 ATGGCTGTCACTACTCACTCTCTTACCGCTACAGAAAAGAAACACTGGTGGCTCACAAACAGAAAAATTGTTGAGAAGTACATAAAAGATGCTCGGAGCTTAATAGCGACGCAAGAACAGAGCGAGATCGTTTCGGCTTTGAGTCTTCTAGATGCGGCTTTAGCTATATCTCCGCGTTTAGATCACGCGCTTGAGTTGAAAGCGAGGTCGTTGCTTTATCTACGACGGTTCAAGGATGTTGCTGATATGCTTCAGGAATATATTCCGAGTTTGAGAATGGCGAATGATGATCCTTCCTCTGGTTCTTCTGAGTCGTCTTCTTCCAGGGAAGGTTTATGGAAAAGCTGTGATAAAGAAGGGCAATGGAGATACTTGGTTTTGGGTGAAGCATGTTGCCATTTAGGACTAATGGAGGATGCAATGGTTCTTCTTCAAACTGGAAAACGGATTGCGAGTGATGCATTCCGGCGAGAGAGTGTATGCTGGTCCGACGACAGTTTTCCTTTGTTATCTATCCCGATTGCCGGAGATACGGTAAACCAGCCGACTACCTCACCGCAGCGTGCTCCTATAAATGTGACAGAGAGAGTAACACACCTCCTCAGCCACATCAAGTTTCTCCTTCGCCGTCGTGCAGCGGCTCTTGCTGCACTTGATGCTGGTCTTTACTCAGAAGCCATCCGTCATTTCTCAAAAATTGTAGATGGGCGCCGCGCTGCGCCACAAGGCTTCCTTGCGGAATGCTACATGCATAGAGCCTCCGCAAACCGTTCTGCTGGTCGAATTGCTGAGTCTATAGCTGATTGTAACCGTACACTTTCCCTAGACCCAACCTGTATTCAAGCCCTTGAAACCAGAGCTTCACTTTTCGAAACAATTCGTTGCTTACCTGATTCTTTACACGATTTGGAACATTTGAAGCTTCTCTACAACTCCATCTTACGTGATCGGAAACTTCCCGGTCCGGCATGGAAGCGTCACAATGTGAGATACAGAGAGATTCCAGGGAAACTCTGTGCCTTAACCACAAAAATTCAAGAACTGAAACAAAGATTAGCTTCTGGTGAAACCACTAGTGTTGATTACTATGCATTGATTGGGATTCGGCGAGGCTGTTCGCGTTCTGAATTGGAGAGAGCTCATTTGTTGCTCTGTCTTCGCCATAAGCCAGATAAAGCTACAAATTTCATTGAACGGTGCGAGTTTGCGGATGAACGCGATATTGATACAGTTAAGGAAAAAGCAAAGATGTGTTCATTGTTATTGTACAGATTGATTCAAAAGGGTTACACGAGTGTGATGAGTAACGTATTAGACGAAGAAGCCGCCGAAAAACTAAGAAAGAAAAATGCTGTTGCTGCTGCAGCACAAGCTCAGGCACAAGCACAGGCTCAGGCTCAAACACATGCACAAGCACAAGCACAGGTAGCAGCCATTCAAGTAATTAAGAAAAAAAATGAAGCTGAGTTGAAAAATAAGAAGCCTGAAGTTAAGATTGGTAATGTTTTACATGAAAATGATCAGCCTCCGTCTCTGATATCTTCCTGTACTGTGAACCCAGCCGTATTTCAAGGTGTGTTTTGCCGTGATCTTGCGGTGGTCGGAAGCTTGTTGACGCAGGTCGGGTTTAATCGTCCGATCCCGGTGAAATATGAAGCATTGAGCTGCTGA 1671 0.453 MAVTTHSLTATEKKHWWLTNRKIVEKYIKDARSLIATQEQSEIVSALSLLDAALAISPRLDHALELKARSLLYLRRFKDVADMLQEYIPSLRMANDDPSSGSSESSSSREGLWKSCDKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRIASDAFRRESVCWSDDSFPLLSIPIAGDTVNQPTTSPQRAPINVTERVTHLLSHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRAAPQGFLAECYMHRASANRSAGRIAESIADCNRTLSLDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRLASGETTSVDYYALIGIRRGCSRSELERAHLLLCLRHKPDKATNFIERCEFADERDIDTVKEKAKMCSLLLYRLIQKGYTSVMSNVLDEEAAEKLRKKNAVAAAAQAQAQAQAQAQTHAQAQAQVAAIQVIKKKNEAELKNKKPEVKIGNVLHENDQPPSLISSCTVNPAVFQGVFCRDLAVVGSLLTQVGFNRPIPVKYEALSC 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03530 556 Coils Coil 455 475 - -
Vifa5g03530 556 SUPERFAMILY TPR-like 212 307 IPR011990 GO:0005515
Vifa5g03530 556 SUPERFAMILY Chaperone J-domain 357 395 IPR036869 -
Vifa5g03530 556 Gene3D DnaJ domain 344 487 IPR036869 -
Vifa5g03530 556 PANTHER OS01G0273500 PROTEIN 111 556 - -
Vifa5g03530 556 CDD DnaJ 361 395 IPR001623 -
Vifa5g03530 556 Gene3D Tetratricopeptide repeat domain 20 313 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03530 Vifa-Chr5 1153258854 1153261035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03530 - - gmx:100808420 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03530 5 1153258854 1153261035 Vifa5g03530 5 1153258854 1153261035 ECH
Vifa5g03530 5 1153258854 1153261035 Vifa3g02150 3 533297006 533299125 PCT