Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02150 ATGGCCATCACCACTCCCTGTCTCAATACTACAGAAAAGAAACACTGGTGGCTCACAAATCGTAAGATTGTTGAGAAATACATCAAAGACGCACGAAGCCTCATTGCGACACAAGAACCCAACGAGATTGTTTCCGCTCTGACTCTACTTGACGCGGCTCTTGCTATCTCTCCGTCCTCAGATCAAGCTCTTGAGCTTAAAGCGAGATCTTTGCTCTATCTGAGAAGATTCAAGGATGTTGCAAATATGCTTCAGGATTACATTCCGAGTCTCAAAATGGCTAACGATGATTCTGGCTCTGTTTCTTCTGATGGTTCCTCTCAACAGCTTTCAAGAGAAGGCGTCAAGTTGTTATCTTCCTCGGATTCCTCTGATCCAGATCAGAGCTTCTTCAAGTGCTTCTCTGTCTCTGATTTGAAAAAGCGAGTCATGGCTGGTCTCTGCAAAAGTTCTGATAATGAAGGATATTGGAGATACTTGATTCTGGGGAAAGCATGTTGCCATTTAGGTCTAATGGAAGATGCATTGGTTCTTCTTCAAACCGGAAAACGCCTCACCAGCGCCGCGTTCCGCCGCGAGAGCGTGTGTTGGTCCGACGACAGTTTCTCGCTATGGAACACACCGTTCCCCGGGGACGCTATTTCCACAACTCCACCTCGAAGCCCTCTATCAGAATCCGAAACCGTAAACCAACTCATTGCACACATAAAATTCCTCCTCCGTCGACGCGCTGCCGCAATCGCTGCCATGGACGCTGGACTCCACATGGAAGCCATCCGTCACTTCTCGAAAATCGTCGACGGTCGCCGTGGTGCTCCACAAGGATTCCTCGCCGAATGCTACATGCACAGAGCCACTGCTTTTTGTTCAGCAGGTAGAATTGCTGATTCAATTGCGGATTGTAACAGAACACTCTCATTAGATCCTACATGTATTCAAGCACTTGAAGCTAGAGCTTCGATTCTCGAAACCATCCGTTCCTATCAAGATTGCCTTCATGATCTCGAACACTTGAAGCTTCTATATAATACAATCTTACGCGATCGTAAACTCGCCGGTCCGTTATGGAAACGTCATAATGTTCGTTATAACGAGATTCCAGGGAAACTATGCACTCTCACCGCGAAAATTCAACAGCTGAAAATCAAAATGGCGTCCGGCGAAACGCGTAATGTGGATTACTATGCTTTAATCGGTATACGCCGCGGCTGTGGTCGACCGGAGTTGCATCGGGCTCATCTTTTACTTTGCTTGAAGCATAAACCAGAGAAAGCCACGTGTTTCATTGAAAGATGTGAACTCGCGGATGAACGCGATCTTGAATCGGTTAAAGATAGAACGAGAATGGCTTCAATGCTGTTGTATAGGTTGCTTCAGAAAGGTTATTCAAGTGTTATGAATTCCATTGCAGAAGATGAGAATGCAGAGAAAGAGAAACAAAGGAAAATTGCTTTACAGTTACAAGAAACTTCTGCAAATGTACATTCAGTTGAAGTGTTGCAACAGAAAAGTAGGGATGAAATGGAAGAAAAATTTGCCATGTCTTCGCCGAGCATTGCGAATCCAACGGTGTTTCAGGGAGTGTTTTGCCGTGATCTATCGGTGGTGGGAAACTTGCTTTCTCAAAGGTTTAGTAGTAGGTCAATTCCGGTCAAATACGAAGCGCTTAGTTGTTGA 1677 0.4544 MAITTPCLNTTEKKHWWLTNRKIVEKYIKDARSLIATQEPNEIVSALTLLDAALAISPSSDQALELKARSLLYLRRFKDVANMLQDYIPSLKMANDDSGSVSSDGSSQQLSREGVKLLSSSDSSDPDQSFFKCFSVSDLKKRVMAGLCKSSDNEGYWRYLILGKACCHLGLMEDALVLLQTGKRLTSAAFRRESVCWSDDSFSLWNTPFPGDAISTTPPRSPLSESETVNQLIAHIKFLLRRRAAAIAAMDAGLHMEAIRHFSKIVDGRRGAPQGFLAECYMHRATAFCSAGRIADSIADCNRTLSLDPTCIQALEARASILETIRSYQDCLHDLEHLKLLYNTILRDRKLAGPLWKRHNVRYNEIPGKLCTLTAKIQQLKIKMASGETRNVDYYALIGIRRGCGRPELHRAHLLLCLKHKPEKATCFIERCELADERDLESVKDRTRMASMLLYRLLQKGYSSVMNSIAEDENAEKEKQRKIALQLQETSANVHSVEVLQQKSRDEMEEKFAMSSPSIANPTVFQGVFCRDLSVVGNLLSQRFSSRSIPVKYEALSC 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02150 558 Coils Coil 470 490 - -
Vifa3g02150 558 SMART tpr_5 156 189 IPR019734 GO:0005515
Vifa3g02150 558 SMART tpr_5 278 311 IPR019734 GO:0005515
Vifa3g02150 558 Gene3D Tetratricopeptide repeat domain 217 352 IPR011990 GO:0005515
Vifa3g02150 558 PANTHER OS01G0273500 PROTEIN 8 558 - -
Vifa3g02150 558 SUPERFAMILY TPR-like 245 339 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02150 Vifa-Chr3 533297006 533299125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02150 - - gmx:106797171 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02150 3 533297006 533299125 Vifa3g02150 3 533297006 533299125 ECH
Vifa5g03530 5 1153258854 1153261035 Vifa3g02150 3 533297006 533299125 PCT