Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03504 ATGAAATCTTCAATCACATGTCTTTCCATTCTAATCCTCTTAACAACCTCAAACGCATCAAACCAAACCGAGAATCTCTCTGTCTACGAAACCCTTCAGCAATATGATTTCCCTGTTGGTATTCTTCCACAAGGTGCCACAAGCTACGAGCTAAACAAAAACACAGGCAAGTTCACGGTGTATTTTCAAGGAACATGCATCTTCGGTATAAAATCTTACGATCTTAAGTACAAATCTACTATCAAGGGATTTATCTCCAAAGGTAAACTCAGTAAATTGAAGGGTATTAGTGTCAAAGTTGAACTCATATGGCTCAAAATTGTGGAGGTGACTCGTCATGGTGATGATCTTGAGTTTTCTGTTGGTATTGCTTCTGCTGAATTTAGTATTGATAACTTTTTAGAGATTCCTCAGTGTGGGTGTGGATTTGATTGCAACGGTTTGAAAGAAGCATGCAATAGGGGGAAGATGCAATGCTCTATGATGTTAAACTCTATTGGCTTGGCACTTGCGTGTTGTGTCTAG 525 0.3905 MKSSITCLSILILLTTSNASNQTENLSVYETLQQYDFPVGILPQGATSYELNKNTGKFTVYFQGTCIFGIKSYDLKYKSTIKGFISKGKLSKLKGISVKVELIWLKIVEVTRHGDDLEFSVGIASAEFSIDNFLEIPQCGCGFDCNGLKEACNRGKMQCSMMLNSIGLALACCV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03504 174 PANTHER T31J12.3 PROTEIN-RELATED 14 140 IPR007493 -
Vifa5g03504 174 SUPERFAMILY At5g01610-like 7 145 IPR036758 -
Vifa5g03504 174 Gene3D - 14 139 IPR036758 -
Vifa5g03504 174 Pfam Protein of unknown function, DUF538 28 133 IPR007493 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03504 Vifa-Chr5 1147941542 1147942567 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03504 - - cam:101515317 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03504 5 1147941542 1147942567 Vifa5g03504 5 1147941542 1147942567 ECH
Vifa5g03504 5 1147941542 1147942567 Vifa3g02186 3 548141002 548141517 ECH
Vifa5g03504 5 1147941542 1147942567 Vifa3g02186 3 548141002 548141517 PCT