Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03474 ATGGCCACTCTTCCTGCTTCCCCTTCACCCCCTTGGCCAAACCCTAATCTCAATTCAATTCCAAACCCTAATTTCCATCCCGATCAATCTCAAACCCTTGACTTCGATTCCCTAATGTCCCCCCAATCTCACCATGCTTCCACCGATTCACCGGAATCTCCGCCCACCACACCGCCGTCGCTACTTCATCTCTCCTTTAACCAGGACCACGCCTGCTTCGCCGCCGCCACTGATAACGGCTTTCGCATATACAACTGCGACCCTTTCCGGGAGCTTTTCCGCCGGGAGTTCGGCGGCGGAGGAATCGGCCGTGTGGAAATGCTTTTCCGATGTAACATATTAGCACTTGTCGGCGGTGGGTCTCAACCTCAGTACCCTCCCACCAAAGTCATGATCTGGGATGATCATCAAGGTACGTGCATCGGGGAGCTTTCGTTTCGGTCTCCTGTTAGCGGTGTTCGGCTTCGGCGGGATCGGATAATTGTCGTGGTGGAGCAGAAGATATTTGTGTATAATTTTGCTGACTTGAAGCTGTTGCATCAGATTGAAACGATTGCCAACCCTAAGGGGCTTTGTGAAGTTTCACACTTGAGTGATGCTCTTGTTCTCGCTTGCCCTGGTTTGCATAAAGGCCAGATTCGCATTGAGCATTTTTCGCAGAAGAGGACTAAGTTTATTTCTGCTCATGATTCGAGAATAGCTTGCTTCGCTCTTACGCTTGATGGACAATTTGTAGCCACTGCAAGCACCAAGGGTACCCTGATTCGGATTTATGATGCCGATCTTGGCACGCTACTTCAGGAAGTAAGAAGAGGTGCAAATGCGGCAGAGATATTTAGTTTGGCGTTTTCTTCCACTGCTCAGTGGTTAGCAGTTTCCAGTGACAAGGGTACTGTCCATGTTTTTGGCCTTAAGGTTAATCCCAATGCTCCTGAGAATGAAAACTCCCATGGATCGTCGAGTTCTGATGCCGTCATTGCTCCATCTAGCTCGTCTCGCTCCTTCATTAAATTTAAAGGAGTGTTGCCCAAGTATTTCAATTCAGAGTGGTCAGTTGCTCGGTTTCACTTACACGAGGGCACCCAGTACACAGTTGCATTTGGTGTCGAAAAGAATACAGTCATAATTCTTGGCATGGATGGATGGTATAATATGAGGAACTTCTATAAATGCCAATTCGATCCAGCGCAAGGAGGTGAAATGACCCAGCTTGAATTTCATAACATTTTAATGTCAGAAACAGCCTTGTGA 1251 0.4788 MATLPASPSPPWPNPNLNSIPNPNFHPDQSQTLDFDSLMSPQSHHASTDSPESPPTTPPSLLHLSFNQDHACFAAATDNGFRIYNCDPFRELFRREFGGGGIGRVEMLFRCNILALVGGGSQPQYPPTKVMIWDDHQGTCIGELSFRSPVSGVRLRRDRIIVVVEQKIFVYNFADLKLLHQIETIANPKGLCEVSHLSDALVLACPGLHKGQIRIEHFSQKRTKFISAHDSRIACFALTLDGQFVATASTKGTLIRIYDADLGTLLQEVRRGANAAEIFSLAFSSTAQWLAVSSDKGTVHVFGLKVNPNAPENENSHGSSSSDAVIAPSSSSRSFIKFKGVLPKYFNSEWSVARFHLHEGTQYTVAFGVEKNTVIILGMDGWYNMRNFYKCQFDPAQGGEMTQLEFHNILMSETAL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03474 416 Gene3D - 57 382 IPR015943 GO:0005515
Vifa5g03474 416 Pfam WD domain, G-beta repeat 272 302 IPR001680 GO:0005515
Vifa5g03474 416 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g03474 416 MobiDBLite consensus disorder prediction 21 51 - -
Vifa5g03474 416 FunFam Autophagy-related protein 18a isoform A 59 395 - -
Vifa5g03474 416 SMART WD40_4 137 172 IPR001680 GO:0005515
Vifa5g03474 416 SMART WD40_4 219 259 IPR001680 GO:0005515
Vifa5g03474 416 SMART WD40_4 51 85 IPR001680 GO:0005515
Vifa5g03474 416 SMART WD40_4 262 303 IPR001680 GO:0005515
Vifa5g03474 416 SUPERFAMILY WD40 repeat-like 52 305 IPR036322 GO:0005515
Vifa5g03474 416 MobiDBLite consensus disorder prediction 1 60 - -
Vifa5g03474 416 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 57 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03474 Vifa-Chr5 1142100577 1142102448 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03474 K22991 - gmx:100781692 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03474 5 1142100577 1142102448 Vifa5g03474 5 1142100577 1142102448 ECH
Vifa5g03474 5 1142100577 1142102448 Vifa3g01931 3 492177123 492179538 ECH