Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01931 ATGTCTCACACCTCTCAAACCCTAATGCCTCTTGGTTCAGAAGAACCACCTTCGTCAACCCCAATTCCCTCTCCCCCTAATCCATCCCCAAATTCGACCTCCGCCGCTCTCCATATCTCTTTCAACCAAGACTCCGGTTGTTTCGCGGTTGGCACCGATCAAGGCTTCCGAATCTATAACTGTGACCCTTTCAGGGAAATTTTCCGACGTGATTTCGGTCATGGCGGCGGAATCGGTTTGGTTCACATGTTGTTTCGATGCAATATTCTTGCTTTTGTTGGTGGGGGATCGGACCCTCGGTATCCGGCTGATAGGGTGATGATCTGGGACGATCATCAGTCGCGGTGTATCGGAGAGTTGTCGTTTCGGTCGGAGGTGAAAGGTATTCGGCTGAGGAGAGACAGGATTGTGGTTGTTTTGGGGCATAAAATTTTTGTTTATAATTTCTCTGATCTCAAGGTTCTTCATCAAATTGAGACTATTGCCAACCCTAAGGGTCTTTGTGAGGTTTCACATCATTTGGAAAATATGGTGTTGGCTTGTCCTGGGTTGCAGAAGGGGCAGGTTAGGGTTGAACATTATGCTTCCAAGAGAACAAAGTTCATCATGGCACATGATTCCAGAATTGCTTGTTTTAATATAACCCAAGATGGGCTTTTACTTGCTACTGCAAGCTCCAAGGGGACTCTTATTAGGATTTTCAATACCTTGGATGGTTCTTTGCTCCAAGAGGTACGAAGAGGTGCTGACCGAGCTGAGATATATAGCCTTGCCTTTTCTCCCACGGCTCAGTGGTTAGCTGTTTCGAGTGACAAGGGAACTGTTCATGTATTCAACTTGAAGGTTGATTCGGGATTGTTGGGGCACGAAAGATCACATAATACATCTGAGTCTAGTCCTACTAGTCCATCGGCAGCTTTGTCTCTCTCATTTATTAGAGGTGTGTTACCTAAGTATTTTAGCTCAGAGTGGTCAGTGGCTCAATTTCGCTTGCAAGAAGGTTTACAGTATAATGTTGCATTTGGCCATCAGAAAAATACAATTGTAATACTCGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATACTGCAACCGGTGGGGAGATGAAGCAACTTGAATATTACAATTTCCTAAAGCCAGAAGAGACATTCTAG 1158 0.4508 MSHTSQTLMPLGSEEPPSSTPIPSPPNPSPNSTSAALHISFNQDSGCFAVGTDQGFRIYNCDPFREIFRRDFGHGGGIGLVHMLFRCNILAFVGGGSDPRYPADRVMIWDDHQSRCIGELSFRSEVKGIRLRRDRIVVVLGHKIFVYNFSDLKVLHQIETIANPKGLCEVSHHLENMVLACPGLQKGQVRVEHYASKRTKFIMAHDSRIACFNITQDGLLLATASSKGTLIRIFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHERSHNTSESSPTSPSAALSLSFIRGVLPKYFSSEWSVAQFRLQEGLQYNVAFGHQKNTIVILGMDGSFYRCQFDTATGGEMKQLEYYNFLKPEETF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01931 385 SUPERFAMILY WD40 repeat-like 33 285 IPR036322 GO:0005515
Vifa3g01931 385 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g01931 385 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
Vifa3g01931 385 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 32 378 - -
Vifa3g01931 385 SMART WD40_4 238 279 IPR001680 GO:0005515
Vifa3g01931 385 SMART WD40_4 113 148 IPR001680 GO:0005515
Vifa3g01931 385 SMART WD40_4 22 60 IPR001680 GO:0005515
Vifa3g01931 385 SMART WD40_4 195 235 IPR001680 GO:0005515
Vifa3g01931 385 MobiDBLite consensus disorder prediction 16 30 - -
Vifa3g01931 385 FunFam Autophagy-related protein 18a isoform A 34 364 - -
Vifa3g01931 385 Gene3D - 32 367 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01931 Vifa-Chr3 492177123 492179538 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01931 K22991 - gmx:100787427 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01931 3 492177123 492179538 Vifa3g01931 3 492177123 492179538 ECH
Vifa5g03474 5 1142100577 1142102448 Vifa3g01931 3 492177123 492179538 ECH