Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03435 ATGGACAAAGTGATGAGGTTGGCATCCGAGAAAGGTGTGGTGATTTTCACAAAAAGCTCTTGCTGTCTATGCTACGCAGTTAACATTTTGTTTAAAGAACTAGGGATTAGGCCTATGGTTTATGAAATAGATCAGGATCCAGATGGAAGGGAAATGGAGAAAGCTTTGATGAGGTTAGGTTGCACTGCACCTGTTCCTGCTGTGTTCATTGGAGGGAAACTGAAAGGTTCCACTAATGAAATCATGTCACTTCACCTAAGTGGTTCACTCACTCAGTTGTTGAAACCATACCAGTCTTGTTCTTGA 306 0.4183 MDKVMRLASEKGVVIFTKSSCCLCYAVNILFKELGIRPMVYEIDQDPDGREMEKALMRLGCTAPVPAVFIGGKLKGSTNEIMSLHLSGSLTQLLKPYQSCS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03435 101 SUPERFAMILY Thioredoxin-like 1 97 IPR036249 -
Vifa5g03435 101 Gene3D Glutaredoxin 1 100 - -
Vifa5g03435 101 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Vifa5g03435 101 FunFam Glutaredoxin family protein 1 101 - -
Vifa5g03435 101 Pfam Glutaredoxin 13 74 IPR002109 -
Vifa5g03435 101 CDD GRX_GRXh_1_2_like 13 93 - -
Vifa5g03435 101 PANTHER GLUTAREDOXIN 1 96 IPR011905 -
Vifa5g03435 101 NCBIfam glutaredoxin-like family 4 98 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03435 Vifa-Chr5 1128490354 1128490659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03435 1 95 Miscellaneous Gene Families AT4G15670 49.474 3.58e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03435 K03676 - mtr:11433569 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03435 5 1128490354 1128490659 Vifa5g03435 5 1128490354 1128490659 ECH
Vifa5g03435 5 1128490354 1128490659 Vifa3g02259 3 568623201 568623500 PCT