Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03121 ATGCGGTGTTGTGTTTCCACACTGGCGGCCTTGGCCGCATTGGCGGTGACGGTTACGGTTGTATGCGGCGGTTCTCCAGTGAGTTTTCTTCCTCTCGAACGGACTATCCCTCTCAACCACCAAGTTGAACTGGCGACTCTGAGAGCTCGCGACAGAGCTCGTCACGGTCGAATCTTGCAAGATACTGGCATTCTCGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTAGTTGGGCTGTATTTCACGAAAGTGAAGATGGGTTCTCCTGCCAAAGAATTTTACGTTCAGATTGATACTGGAAGTGATATCTTGTGGCTTAATTGCAATACTTGCAATAATTGCCCCCAATCTAGTGGCTTAGGGATTGAGCTTAATTTCTTTGACACGGCTAGCTCGTCCACTGCTGCACTGGTTTCCTGCTCGGATCCGGCGTGTTCTTATGCGGCTCAAACTGCCACAAGTCAGTGCTCAACTCAGGTTAATCAGTGCAGCTACACATTTCAGTATGGGGATGGAAGTGGGACATCCGGTTATTATGTTTATGACGCTATGTATTTTGACGTGATCATGGGACAGTCTGTGTTTTCTAACTCTTCTTCTACCGTCCTTTTTGGTTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACAGAAAAGGCGGTTGATGGAATTTTTGGGTTTGGCCCCGGTGCTTTATCTGTTATATCACAATTGTCATCAAAAGGCATGACACCCAAAGTGTTCTCTCATTGCTTAAAAGGAGAGGGCAATGGAGGAGGTGTACTGGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATACTCCACTTGTCCCATTACAGCCTCATTACAACCTAAATCTTCAAAGCATTGCTGTCAATGGACAACTTCTCCCAATCGATCAAAATGTATTTGCAACAGCTAACAACCGGGGAACTATAGTTGATTCTGGTACTACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTCTCAACGCTATAACAACCACTGTGTCACAGTTTTCCAAACCCATAATTTCCAAAGGAAATCAGTGTTATCTCGTCCCCACCAGCCTAGGTGATATATTTCCTCAAGTCAGTTTCAATTTCATGGGTGGAGCATCCATGGTTTTAAAACCAGAACAGTATCTTATACATTATGGTTTCCTGGATGGTGCTGCAATGTGGTGCATTGGTTTCCAAAAGGTGCAGAAGGGATTCACGATTTTAGGAGATCTTGTCCTAAAGGATAAGATATTCGTATACGACTTAGCTAATCAACGAATTGGGTGGACCGACTATGATTGTTCCTTGTCTGTAAATGTCTCTGTGGCTACAAGCAAGAGTAAGGATGCATACATCAATGCAGGGCAGATGAGCGTCAGCTCCTCACACGTTGGTTTTCTCTCCAAGTTGCTACTTATAAGCACTGCGGCTTTTCTTTTGCATATAACAATTTTTTCCGAGCCCCAGTTTTTGTAG 1491 0.444 MRCCVSTLAALAALAVTVTVVCGGSPVSFLPLERTIPLNHQVELATLRARDRARHGRILQDTGILDFSVQGTSDPYLVGLYFTKVKMGSPAKEFYVQIDTGSDILWLNCNTCNNCPQSSGLGIELNFFDTASSSTAALVSCSDPACSYAAQTATSQCSTQVNQCSYTFQYGDGSGTSGYYVYDAMYFDVIMGQSVFSNSSSTVLFGCSTYQSGDLARTEKAVDGIFGFGPGALSVISQLSSKGMTPKVFSHCLKGEGNGGGVLVLGEILEPNIVYTPLVPLQPHYNLNLQSIAVNGQLLPIDQNVFATANNRGTIVDSGTTLAYLVQEAYDPFLNAITTTVSQFSKPIISKGNQCYLVPTSLGDIFPQVSFNFMGGASMVLKPEQYLIHYGFLDGAAMWCIGFQKVQKGFTILGDLVLKDKIFVYDLANQRIGWTDYDCSLSVNVSVATSKSKDAYINAGQMSVSSSHVGFLSKLLLISTAAFLLHITIFSEPQFL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03121 496 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Vifa5g03121 496 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Vifa5g03121 496 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Vifa5g03121 496 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Vifa5g03121 496 CDD pepsin_A_like_plant 81 439 IPR034161 -
Vifa5g03121 496 FunFam Aspartic proteinase-like protein 2 268 446 - -
Vifa5g03121 496 ProSiteProfiles Peptidase family A1 domain profile. 81 435 IPR033121 -
Vifa5g03121 496 FunFam Aspartic proteinase-like protein 2 64 267 - -
Vifa5g03121 496 SUPERFAMILY Acid proteases 76 442 IPR021109 -
Vifa5g03121 496 PANTHER ASPARTYL PROTEASES 21 433 IPR001461 GO:0004190|GO:0006508
Vifa5g03121 496 Gene3D Acid Proteases 64 267 IPR021109 -
Vifa5g03121 496 Gene3D Acid Proteases 268 446 IPR021109 -
Vifa5g03121 496 Pfam Xylanase inhibitor C-terminal 284 435 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03121 Vifa-Chr5 1034933791 1034937385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03121 76 440 Miscellaneous Gene Families AT1G44130 27.649 2.50e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03121 - - gmx:100804147 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03121 5 1034933791 1034937385 Vifa5g03121 5 1034933791 1034937385 ECH
Vifa5g03121 5 1034933791 1034937385 Vifa3g00955 3 232946685 232950450 PCT