Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00955 ATGCGGTTTTCCATCCCGACGCTACTCTTTTCGTCGCTAATATGCTGCTTACTCAGCTTCCCGGTATCCGCCGTATACAGCACCGGTTACCTCCCTCTACAGCGCGCTGTTCCGCTTAGCCACCGCGTTGAGATACACACAATCAAAGCTCGCGACAGACTTCGTCATAATCGATTCTTCCGAGATGGCGGTGGTGTTGTCGACTTCACAGTTCAAGGCTCCTCCGATCCTTTTACCCGTGGGCTGTATACTACTAAAGTAAAGATGGGAAATCCACCTAAGGAATTTAATGTTCAGATTGATACTGGAAGTGACATTTTGTGGGTTAATTGTAATACTTGCAGTAATTGTCCTAAATCTAGTGGAATTGGGATTGAGCTCAATTTCTTTGATACTGTTGCTTCATCCACGGCTGCGATGGTTCGTTGCTCGGACCCTGTATGCACTTACGGTGTTCAAGGTGCTGCTGCTCAATGCTCCCCTCAGTCTACTTCTGACAATGTTAACTCTTCAGCTGCCATTGTTTTCGGGTGTAGCACCTCTCAGTCTGGAGATTTGACCAAGACGGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCCGGTGATCTATCTGTTGTATCACAATTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTGAAAGGAGATGGCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCTGAGCATTGCTGTCAACGGGCAACTTCTCTCAATTAATCCAGATGTATTCACAACGTCTGACAACCGAGGAACTATAGTTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCAATGCAGTAAATACTGCTGTGTCACGTTTTGCTACTCCCTTTATTTCGAAAGGAAGCCAGTGTTATCTGGTCTTAGCCAGTATAGATGCTTATTTTCCTCCAGTCAGTTTAAACTTTGCGGGTGGAGCATCGATGGATTTAAAACCATCACAGTACCTTCTGCATAATGGTTATCAGGATGGTGCTGCAATGTGGTGCATAGGTTTCCAAAAAGTGCAAGAGGGAGTCACAATTTTAGGAGATCTTGTCCTGAAAGACAAGATCGTTGTTTACGACTTGGCTCGTCAGCAAATAGGATGGACTAACTATGACTGTTCCACGTCTGTAAATGTCTCGGTGACTACAACCAAGGATGAGTACATCAATGCAAGAGCAAGACAGACTAGTGTCTGCAGCTCAAAAATAGGGACTCTCTCCAAGTTACTACCATTAAGCATTATGGCTATTTCTATACACATAATAATCTTCATGAAGTCACCACATTTATAA 1404 0.4359 MRFSIPTLLFSSLICCLLSFPVSAVYSTGYLPLQRAVPLSHRVEIHTIKARDRLRHNRFFRDGGGVVDFTVQGSSDPFTRGLYTTKVKMGNPPKEFNVQIDTGSDILWVNCNTCSNCPKSSGIGIELNFFDTVASSTAAMVRCSDPVCTYGVQGAAAQCSPQSTSDNVNSSAAIVFGCSTSQSGDLTKTDKAVDGIFGFGPGDLSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLLSIAVNGQLLSINPDVFTTSDNRGTIVDCGTTLAYLVQEAYDPLVNAVNTAVSRFATPFISKGSQCYLVLASIDAYFPPVSLNFAGGASMDLKPSQYLLHNGYQDGAAMWCIGFQKVQEGVTILGDLVLKDKIVVYDLARQQIGWTNYDCSTSVNVSVTTTKDEYINARARQTSVCSSKIGTLSKLLPLSIMAISIHIIIFMKSPHL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00955 467 CDD pepsin_A_like_plant 83 410 IPR034161 -
Vifa3g00955 467 PRINTS Pepsin (A1) aspartic protease family signature 382 397 IPR001461 GO:0004190|GO:0006508
Vifa3g00955 467 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Vifa3g00955 467 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Vifa3g00955 467 ProSiteProfiles Peptidase family A1 domain profile. 83 406 IPR033121 -
Vifa3g00955 467 PANTHER ASPARTYL PROTEASES 14 404 IPR001461 GO:0004190|GO:0006508
Vifa3g00955 467 Gene3D Acid Proteases 239 417 IPR021109 -
Vifa3g00955 467 SUPERFAMILY Acid proteases 79 414 IPR021109 -
Vifa3g00955 467 Pfam Eukaryotic aspartyl protease 83 405 IPR033121 -
Vifa3g00955 467 Gene3D Acid Proteases 69 238 IPR021109 -
Vifa3g00955 467 FunFam Aspartic proteinase-like protein 2 239 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00955 Vifa-Chr3 232946685 232950450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00955 74 411 Miscellaneous Gene Families AT1G44130 26.053 9.10e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00955 - - mtr:11430510 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00955 3 232946685 232950450 Vifa3g00955 3 232946685 232950450 ECH
Vifa5g03121 5 1034933791 1034937385 Vifa3g00955 3 232946685 232950450 PCT