Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03083 ATGAGTTCATCCTCAGGTCAGACTAGTGGCCATGATCTCTCTTTCAAGATCTTACTAATCGGCGATTCTGGTGTTGGAAAAAGTTGCCTACTCGTTACCTTCATTTCCAGTTCATCTGTGGAAGATCTTTCACCAACCATTGGTGTTGATTTTAAGATCAAAACCCTCACTGTCGGTGGCAAGAGATTAAAACTTACAATTTGGGATACAGCTGGGCAGGAACGATTCAGGACTCTGACAAGTTCTTACTATAGAGGAGCACAAGGAATTATTCTTGTTTATGATGTTACAAGGAGGGAAACCTTTACAAACTTATCTGAGGTGTGGTCTAAGGAATTGGAACTCTATTCAACTAACCAGGAGTGCGTGAAGATGCTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGATTAGCCCTTGCTAAAGAATTGGGATGTTTGCTTCTTGAATGTAGTGCTAAAACTCGAGAGAATGTGGAGAAGTGCTTTGAAGAACTCGCTCTAAAGATAATGGAAGCGCCTAGTTTATTGGAAGAAGGATCAACAGCAATAAAAAGGAATGTTCTAAAACAGAAACAAGAACCACAAGCACGACAAAACAGTGGCTGTTGCTCTTAA 639 0.4085 MSSSSGQTSGHDLSFKILLIGDSGVGKSCLLVTFISSSSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELELYSTNQECVKMLVGNKVDRDSERAVSREEGLALAKELGCLLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSTAIKRNVLKQKQEPQARQNSGCCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03083 212 PRINTS Transforming protein P21 ras signature 15 36 - -
Vifa5g03083 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Vifa5g03083 212 PRINTS Transforming protein P21 ras signature 56 78 - -
Vifa5g03083 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Vifa5g03083 212 PRINTS Transforming protein P21 ras signature 38 54 - -
Vifa5g03083 212 ProSiteProfiles small GTPase Rho family profile. 8 180 - -
Vifa5g03083 212 ProSiteProfiles small GTPase Arf family profile. 8 178 - -
Vifa5g03083 212 FunFam Ras-related protein RABC1 8 211 - -
Vifa5g03083 212 Pfam Ras family 16 178 IPR001806 GO:0003924|GO:0005525
Vifa5g03083 212 NCBIfam small GTP-binding protein domain 15 172 IPR005225 GO:0005525
Vifa5g03083 212 SMART ran_sub_2 20 211 - -
Vifa5g03083 212 Gene3D - 9 211 IPR027417 -
Vifa5g03083 212 ProSiteProfiles small GTPase Ras family profile. 5 212 IPR001806 GO:0003924|GO:0005525
Vifa5g03083 212 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Vifa5g03083 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 201 IPR027417 -
Vifa5g03083 212 SMART rab_sub_5 15 180 - -
Vifa5g03083 212 SMART rho_sub_3 17 181 IPR001806 GO:0003924|GO:0005525
Vifa5g03083 212 SMART ras_sub_4 12 180 - -
Vifa5g03083 212 CDD Rab18 15 177 - -
Vifa5g03083 212 SMART arf_sub_2 5 181 - -
Vifa5g03083 212 PANTHER RAS-RELATED PROTEIN RAB 14 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03083 Vifa-Chr5 1020573634 1020575851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03083 9 180 EF-hand Containing Proteins AT5G27540 28.324 3.41e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03083 K07910 - gmx:100799887 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03083 5 1020573634 1020575851 Vifa5g03083 5 1020573634 1020575851 ECH
Vifa5g03083 5 1020573634 1020575851 Vifa3g00931 3 226471630 226473264 PCT