Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00931 ATGAGTTCATCTTCTGGTCAAAGTAGTAGCTATGATCTCTCTTTCAAGATCTTGTTGATTGGTGATTCTGCTGTTGGAAAAAGTAGCTTAATTGTTAGCTTCATCTCTGGCTCTGTTGAAGATATTGCCCCCACAATTGGTGTTGATTTTAAGATCAAGCTTCTCACAGTAGGTGACAAGAGATTGAAACTAACGATTTGGGACACTGCTGGACAAGAAAGGTTCAGAACGCTAACTAGTTCTTACTACAGAGGAGCACAAGGAATTATTCTCGCTTATGATGTAACAAGAAGAGAAACATTTACAAACTTATCAGAGGTGTGGTCCAAAGAAGTGGAACTCTATTCAACTAATCAGGATTGTGTGAAGATGCTAGTTGGAAATAAAGTTGATAGGGAATCTGCGCGGGCAGTCAGCACAGAAGAGGGTTTGGCGCTTGCAAAAGAATTTGGATGCTTGTTTTTTGAATGCAGTGCTAAAACTAGAGAAAATGTAGACAAGTGCTTTGAGGAACTTACACAAAAGATAATGGAAGTTCCTAGTCTCTTGGAAGAAGGATCAATATTAGTGAAAAGGAACATTTTAAAGCAAAGACAGGAACCACAGACATCCCAAGATAGCGGTTGTTGCTTTTAA 636 0.3899 MSSSSGQSSSYDLSFKILLIGDSAVGKSSLIVSFISGSVEDIAPTIGVDFKIKLLTVGDKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILAYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRESARAVSTEEGLALAKEFGCLFFECSAKTRENVDKCFEELTQKIMEVPSLLEEGSILVKRNILKQRQEPQTSQDSGCCF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00931 211 Gene3D - 8 210 IPR027417 -
Vifa3g00931 211 SMART ran_sub_2 20 211 - -
Vifa3g00931 211 SMART arf_sub_2 1 180 - -
Vifa3g00931 211 SMART ras_sub_4 12 179 - -
Vifa3g00931 211 NCBIfam small GTP-binding protein domain 15 172 IPR005225 GO:0005525
Vifa3g00931 211 ProSiteProfiles small GTPase Arf family profile. 8 176 - -
Vifa3g00931 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Vifa3g00931 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Vifa3g00931 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Vifa3g00931 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Vifa3g00931 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Vifa3g00931 211 FunFam Ras-related protein RABC1 8 210 - -
Vifa3g00931 211 SMART rab_sub_5 15 179 - -
Vifa3g00931 211 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
Vifa3g00931 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Vifa3g00931 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Vifa3g00931 211 PANTHER RAS-RELATED PROTEIN RAB 14 196 - -
Vifa3g00931 211 CDD Rab18 15 176 - -
Vifa3g00931 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 193 IPR027417 -
Vifa3g00931 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Vifa3g00931 211 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00931 Vifa-Chr3 226471630 226473264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00931 14 159 EF-hand Containing Proteins AT5G27540 29.605 2.88e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00931 K07910 - gmx:100818801 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00931 3 226471630 226473264 Vifa3g00931 3 226471630 226473264 ECH
Vifa5g03083 5 1020573634 1020575851 Vifa3g00931 3 226471630 226473264 PCT