Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03070 ATGTTTAAGAGAATGATGAAGGGAGGGCAAAAGAAGCCCTCCAAATCGGAATCTAACGACGGATACGGTCCTCCGGCGAGTGAGGTCAATCCATCGGCGGCTGTGGTTGTTCCTCCGCCGTCTGGAAAAATCGAGCCGCTTCCGTTGTTCCGTGATGTACCGGTTTCTGAGAGACAGAATTTGTTTCTCCGGAAGCTTCAGATTTGTTGCCACACATTGGATTTCACCGACACGATGAAATCGGTTCGGGAGAAGGAAATCAAGAGACAGACTTTGATGGAATTGGTTGAATTCATTCAGTCTAGTTCGAGTAAGATAACGGAGATTTGTCAGGAAGAGATGATTAAAATGGTGTCCGTGAATATTTTCCGGTGTCTCCCGCCGGCGTTTCATGAGAACACGGGACAAGATGCTACTGATCCGGAAGAGGAGGAGCCTTGTTTGGAACCGGCGTGGCCTCATTTGCAGCTTGTTTATGAGGTTCTCCTTAGATATGTCGTTTCGTCTGATACTGATACTAAGGTAGCTAAACGTTACATTGATCATTCATTTGTGCTCAAATTGCTTGATTTGTTTGACTCCGAGGACCCTCGAGAACGTGAGTATGTGAAAACTATCTTGCATCGCGTGTATGGGAAGTTTATGGTTCATAGACCTTATATTAGGAAGGCTATTAACAACATATTTTACCGGTTTATATATGAGACTGAGAGACATAGTGGGATTACGGAGCTACTTGAGATTCTTGGGAGTATCATTAATGGGTTTGCTTTGCCCATGAAGGAGGAGCATAAATTATTTCTTGTGAGGGCGTTGTTGCCTTTGCATAAACCTAAACCCGTAGCTGTGTACCATCAGCAGTTGTCGTACTGCATTTCTCAGTTTGTCGAGAAGGATTTTAAGCTAGCGGACACTGTTATTAGGGGTTTGTTGAAGTATTGGCCCGTCACCAATTGTCAGAAGGAAGTTCTATTTCTCGGAGAACTGGAGGAGGTGCTGGAGGCTACACAAGCTGCAGAGTTCCAACGCTGCATGGTTCTTCTTTTTAGACAGATTGCTCGCTGTCTCAATAGTCCGCATTTTCAGGTTGCAGAACGAGCCCTCTTTTTGTGGAATAATGAGCACATTGTCGGTTTAATAGCCCAAAACAGGACTGTAATATTACCCATAATATTCGAAGCATTGGAGAAAAATGTCCAGAGTCATTGGAACCAGGCAGTTAATGGGTTAACCGTGAATGTTAGGAAAATGTTTCTGGAAATGGATGCTGAACTGTTTGAAGAGTGCCAGAGACAGTATTTGGAGAAAGAGGCTAAAGCCAAAGAGGTGGAAGAGCTGCGGGAATTGAATTGGAAGAGATTGGCTGATGCCGCCGCACTGAATGGGCCGGATATGATCACAGCTTAG 1407 0.4471 MFKRMMKGGQKKPSKSESNDGYGPPASEVNPSAAVVVPPPSGKIEPLPLFRDVPVSERQNLFLRKLQICCHTLDFTDTMKSVREKEIKRQTLMELVEFIQSSSSKITEICQEEMIKMVSVNIFRCLPPAFHENTGQDATDPEEEEPCLEPAWPHLQLVYEVLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYVKTILHRVYGKFMVHRPYIRKAINNIFYRFIYETERHSGITELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAVYHQQLSYCISQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVLLFRQIARCLNSPHFQVAERALFLWNNEHIVGLIAQNRTVILPIIFEALEKNVQSHWNQAVNGLTVNVRKMFLEMDAELFEECQRQYLEKEAKAKEVEELRELNWKRLADAAALNGPDMITA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03070 468 Gene3D - 54 457 IPR011989 -
Vifa5g03070 468 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 54 457 - -
Vifa5g03070 468 SUPERFAMILY ARM repeat 59 440 IPR016024 -
Vifa5g03070 468 PIRSF PP2A_B56 9 465 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa5g03070 468 MobiDBLite consensus disorder prediction 1 34 - -
Vifa5g03070 468 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 47 458 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa5g03070 468 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 31 459 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa5g03070 468 Coils Coil 426 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03070 Vifa-Chr5 1014535001 1014541664 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03070 K11584 - gmx:100798308 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03070 5 1014535001 1014541664 Vifa5g03070 5 1014535001 1014541664 ECH
Vifa5g03070 5 1014535001 1014541664 Vifa3g00899 3 223301849 223309441 PCT