Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00899 ATGTTCAAGAAAATCATGAAAGGAGGGCATAAGAAGCCCTCCAAATCGGACTCCCATGATCCTGCTCCGAACAACCGCAACTCGGCGCCTGTTGTCGTTAACCACGCCTCACGTGGCGGTGCTGGAGGAACCTCTGCTGCTAATTCCGCCGCGATGGCTATGACTCCAGCTTCCGGTACAATGGAACCCGCTCCTCTGTTCCGTGACGTGCCGGTTTCGGATAAGCAGAATCTCTTCCTCAAGAAGCTTCACATATGCTGCTTCTCGCTTGACTTTACGGATACAATGAAGAATGTTCGGGAGAAAGAGATCAAGCGGCAAGCTTTGATGGAGCTAGTGGAGTTTATTCAATCAGGTTCGGGGAAGATATCTGAGAGTAGTCAGGAAGAGATGATTAGAATGATATCTATCAATATTTTCCGATGCTTGCCTCCGGCGTCTCATGAGAACACCGGTCAAGAGCCTACTGATCCGGAAGAGGATGAGCCGAGCTTGGAGCCAGCTTGGCCTCACTTGCAGCTTGTTTATGAGCTTCTCCTTAGATATGTGGTTTCTTCTGATACTGACACCAAGGTTGCCAAACGTTACATTGATCATTCCTTTGTGCTCAAGTTGCTTGATTTGTTTGATTCTGAAGACCCGCGTGAGCGCGAATATTTGAAAACCATTCTCCACCGTATATATGGGAAATTCATGGTTCATAGGCCATTTATTAGGAAAGCAATTAACAATATTTTTTATCGGTTTATATATGAGACTGAGAGACACTGTGGTATTGGGGAGCTTTTGGAGATTCTTGGTAGCATCATTAATGGGTTTGCTTTGCCCATGAAAGAGGAGCATAAGTTGTTTCTTGTTAGGGCGCTATTACCTCTGCATAAACCTAAATCGGTTGTTATGTACCACCCGCAGTTGTCTTACTGCATAACTCAGTTTGTGGAGAAAGATTTCAAGCTGGCTGATACGGTTATTAGGGGCTTGTTGAAGTATTGGCCTCTCACGAATTGTCAGAAGGAAATTCTTTTCCTTGGAGAACTTGAGGAAGTGTTGGAGGCTACACAGGCTGCTGAATTCCAACGCTGCATGGTTCAACTTTTCAAACAGATTTCTCGCTGCCTCAACAGTTCCTTTCAGGTTGCAGAGCGAGCCCTCTTTTTATGGAATAACGAGCGTATTGTGACCTTAATTGCTCAAAACAGGACTGTAATATTACCAATAATATTCGAAGCATTTGAGAGAAATATTGAGGGTCACTGGAACCAGGCAGTTCACGGGCTGACCATGAATGTTCGCAAAATGTTTATCGAAATGGATGCAGAATTATTCGAAGAGTGCCAGAGGCAATATGCAGAGAAACAGGCAAAAGCCAAAGATGAGGCAGAGCAGAGGGAATTGACCTGGAAGAGGCTTGCAGAAGCTGCTGCACAGAACGGCGTGGCCGACATGGTCACAGATTAG 1458 0.4547 MFKKIMKGGHKKPSKSDSHDPAPNNRNSAPVVVNHASRGGAGGTSAANSAAMAMTPASGTMEPAPLFRDVPVSDKQNLFLKKLHICCFSLDFTDTMKNVREKEIKRQALMELVEFIQSGSGKISESSQEEMIRMISINIFRCLPPASHENTGQEPTDPEEDEPSLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHCGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVVMYHPQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNCQKEILFLGELEEVLEATQAAEFQRCMVQLFKQISRCLNSSFQVAERALFLWNNERIVTLIAQNRTVILPIIFEAFERNIEGHWNQAVHGLTMNVRKMFIEMDAELFEECQRQYAEKQAKAKDEAEQRELTWKRLAEAAAQNGVADMVTD 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00899 485 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 65 474 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g00899 485 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g00899 485 SUPERFAMILY ARM repeat 76 457 IPR016024 -
Vifa3g00899 485 PIRSF PP2A_B56 4 484 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g00899 485 Coils Coil 442 462 - -
Vifa3g00899 485 Gene3D - 71 473 IPR011989 -
Vifa3g00899 485 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 71 473 - -
Vifa3g00899 485 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00899 Vifa-Chr3 223301849 223309441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00899 K11584 - gmx:100814538 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00899 3 223301849 223309441 Vifa3g00899 3 223301849 223309441 ECH
Vifa5g03070 5 1014535001 1014541664 Vifa3g00899 3 223301849 223309441 PCT