Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03027 ATGGCTCAGAAAGATGAAGTCGAAAAGAAAAACGACGTCGTTTTGAAACTCGACTTACATTGTGAAGGATGCGTCAAGAAAATCAAACGCGCTCTTCTCCGTTTCGACGGTGTGGAAGACGTTAAGGCTGATACAGACGGTAACAAACTCACGGTTATCGGAAAAGTTGATCCTAACAAACCGCCGCCGCCGCCGTTGATAAACCACCGCCGGCGAAGAACAAACACGACGAGGAGGAGGAGAAGAAACCCGACGAGAAAAAGGCTGAAGAAAAAACCGCCCAAACAGTCGTTTGAAAACACGATTATCCTCAAAATCAAAGGAGTTGAATCAGTGAACATTGATGGAGGAAAAGACTTGGTGACGATAAAAGGAACTACCGATGCTAAGGAAATTGTAGCATATCTGACGGAGAAGCTGAAACGCGATGTGGAAGTGATTCAACCGAAGAAAGAAGAGGATAATAAGAAGAATAAGGAGAAAAAAGAAGAAGGTGGTGGTGGTGAGAAGAAAGAGGGTGGAAAAGCAAAAGTGGAGGTTAATAAAATGGAGCATTACGGTTACGGGCAGCAACCTCCAATGTATTGGTACGACGGATTCGAACCGGGTCAGAGTAGTAGTAATAGGGTGGAAGTTCAGCCAGGAGGGTATTCGTATTCGAATCAACAGGGGCAGAATTATAATTATGCGAATCAAGAAGGGTATAATTACAATTACATGAACATGAACCAGAATCATCAACAACAAGGGTATGATTATAGTTATGGGAATCAAGGGTATATGGTAGAGCCTCAACAACCTCCATTCTATTTGCATCCAAATCATCCTCCTCCACAAATGTTTAGCGATGAAAACCCAAATGCTTGTTCCATGATTGACGTAGAGGGGGGAGGTACGGCCTGCAAGATGAAGGTTCCAGTTTTGGACTATTAG 933 0.4352 MAQKDEVEKKNDVVLKLDLHCEGCVKKIKRALLRFDGVEDVKADTDGNKLTVIGKVDPNKPPPPPLINHRRRRTNTTRRRRRNPTRKRLKKKPPKQSFENTIILKIKGVESVNIDGGKDLVTIKGTTDAKEIVAYLTEKLKRDVEVIQPKKEEDNKKNKEKKEEGGGGEKKEGGKAKVEVNKMEHYGYGQQPPMYWYDGFEPGQSSSNRVEVQPGGYSYSNQQGQNYNYANQEGYNYNYMNMNQNHQQQGYDYSYGNQGYMVEPQQPPFYLHPNHPPPQMFSDENPNACSMIDVEGGGTACKMKVPVLDY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03027 310 CDD HMA 19 59 IPR006121 GO:0046872
Vifa5g03027 310 Pfam Heavy-metal-associated domain 18 58 IPR006121 GO:0046872
Vifa5g03027 310 SUPERFAMILY HMA, heavy metal-associated domain 14 59 IPR036163 GO:0046872
Vifa5g03027 310 MobiDBLite consensus disorder prediction 52 97 - -
Vifa5g03027 310 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 101 291 IPR044594 GO:0046872
Vifa5g03027 310 MobiDBLite consensus disorder prediction 151 175 - -
Vifa5g03027 310 ProSiteProfiles Heavy-metal-associated domain profile. 10 78 IPR006121 GO:0046872
Vifa5g03027 310 Gene3D - 11 71 - -
Vifa5g03027 310 Gene3D - 87 154 - -
Vifa5g03027 310 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03027 Vifa-Chr5 999157920 999159640 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03027 - - gmx:100795652 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03027 5 999157920 999159640 Vifa5g03027 5 999157920 999159640 ECH
Vifa5g03027 5 999157920 999159640 Vifa3g00880 3 217806662 217808107 PCT