Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00880 ATGACTATGAAAAAAGAGCAAAAGAATGAAACTGAGAAGAAAGTTGACGAAGGAGCTAAGAAAGACGACAGTCTCCCTCCTGTCGTTTACCAATTCGACTTGCATTGTGAAGGATGCATCAAGAAGATTAAACGATCCGCTCGTCATTTTGCTGGTGTGGAAACTGTTAAAGCAGATCTGTCTTCAAACAAAGTGACCGTTACCGGTAAATTTGACGCTGTTAAACTACAAGATAAACTGGCTGAGAAAACCAAGAAGAAAGTCGAAATCATCTCAGCGCCGCCAAAAAATGACGCCGCTGCCGAGAAACCGTCGGAGAAGAAATCTGACGAGAAAAAGCCTGAAGAGAAGAAGGCCGAAGAGAAGAAACCAGAAGAGAAAAAACCAGAAGAAAATAAGCCTAAACAGAGTACAGTGGTTTTGAAGATCAAATTACACTGTGACGGTTGCATTACTAAAATTAGAAGGATAGTTATGAAATTTAAAGGGGTAGAAACGGTAAACCTTGACGGAGATAAGGATTTGGTAACGGTGAAAGGAACAATGGAACCGAAGGAGTTGGTAGAGTATCTTACAGAGAAGCTAAAGAGAAACGTCGAAATGGTTCCGGCAAAGAAAGATGATGAGAAGAAAGAGAAAGACGGTGGTGGAGAGAAGAAAGATGGTGGCGGTGAGAAGAAAATCGACGGTGGAGATCAAGCGAAAGTGGAGGTTAATAAAATGGAGTATCAGTACCCGATGCAATCTCCAATGTATTGGTACGATGGAGGTGTGGGGCAGAATAGTAATTACGGTATGGATCAGTTTCATCAAGGTGGTTATGGTCATTATGATCAACGTTATGTGGAGCCTGGGTATATGATGAATCAAGGTGGTGGCTATCCTATGCAGGCGCCACAGGTTCCGTTTTACATGAACCCTAATCATCCTCCACCGCAGATGTTCAGTGATGAGAATCCCAATGCTTGTTCTGTTATGTGA 981 0.4241 MTMKKEQKNETEKKVDEGAKKDDSLPPVVYQFDLHCEGCIKKIKRSARHFAGVETVKADLSSNKVTVTGKFDAVKLQDKLAEKTKKKVEIISAPPKNDAAAEKPSEKKSDEKKPEEKKAEEKKPEEKKPEENKPKQSTVVLKIKLHCDGCITKIRRIVMKFKGVETVNLDGDKDLVTVKGTMEPKELVEYLTEKLKRNVEMVPAKKDDEKKEKDGGGEKKDGGGEKKIDGGDQAKVEVNKMEYQYPMQSPMYWYDGGVGQNSNYGMDQFHQGGYGHYDQRYVEPGYMMNQGGGYPMQAPQVPFYMNPNHPPPQMFSDENPNACSVM 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00880 326 MobiDBLite consensus disorder prediction 85 136 - -
Vifa3g00880 326 MobiDBLite consensus disorder prediction 202 233 - -
Vifa3g00880 326 SUPERFAMILY HMA, heavy metal-associated domain 30 88 IPR036163 GO:0046872
Vifa3g00880 326 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g00880 326 ProSiteProfiles Heavy-metal-associated domain profile. 136 199 IPR006121 GO:0046872
Vifa3g00880 326 ProSiteProfiles Heavy-metal-associated domain profile. 25 89 IPR006121 GO:0046872
Vifa3g00880 326 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g00880 326 Pfam Heavy-metal-associated domain 32 86 IPR006121 GO:0046872
Vifa3g00880 326 Pfam Heavy-metal-associated domain 142 199 IPR006121 GO:0046872
Vifa3g00880 326 CDD HMA 34 89 IPR006121 GO:0046872
Vifa3g00880 326 Gene3D - 135 208 - -
Vifa3g00880 326 Gene3D - 27 98 - -
Vifa3g00880 326 MobiDBLite consensus disorder prediction 100 136 - -
Vifa3g00880 326 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 4 326 IPR044594 GO:0046872
Vifa3g00880 326 CDD HMA 140 189 IPR006121 GO:0046872
Vifa3g00880 326 SUPERFAMILY HMA, heavy metal-associated domain 136 194 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00880 Vifa-Chr3 217806662 217808107 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00880 - - ccaj:109790448 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00880 3 217806662 217808107 Vifa3g00880 3 217806662 217808107 ECH
Vifa5g03027 5 999157920 999159640 Vifa3g00880 3 217806662 217808107 PCT