Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02806 ATGGAGGAAGCGCTGGAACTCACACGCGCCAAAGACACGAAAGAAAGGATGGCCGGTGTGGAGCGTCTCTACCAACTTCTCGAAGCTTCTAGAAAGAGTCTCACCTCTTCTGAAGTCACTTCGCTCGTTGATTCCTGCATCGATCTTTTGAAGGATAACAATTTCCGTGTCTCTCAGGGCGCGCTTCAGTCTCTCGCCTCCGCGGTTGTTCTCTCCGGCGAGCATTTTAAGCTTCACTTTAACGCTCTTCTTCCGGCCGTTGTTGACCGCCTCGGTGATGCTAAACAGCCTGTCCGTGACGCTGCGCGGCGATTGCTTCTCACACTCATGGAGGTTTCTTCTCCTACGATAATTGTTGAAAGAGCAGGATCCTCAGCATGGGCGCACAAAAGCTGGAGAGTCAGAGAGGAATTTACTCGAACTGTAACATCTGCAATTAATCTATTTTCATCTACCGAACTTCCACTTCAACGGGCTATCCTACCTCCTGTTTTGCAGTTGCTGAGTGATCCAAATCTTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAAATGTATAAACAAGCTGGTCCTCAATTTCGTGATGAGCTTCACCGCTACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTCGAGGGGATTCAACCAAATGTTCGCTCTTCAAATGGTATTCAGAGTGGCTATGTTACTGGAGAAATTAAGCCTTTGAATCCCAAGAAAAGTAGTCCAAAGGCGAAAAGTTCTTCAAGGGAAGCCTCTCTTTTTGGAGCAGAAGGTGATGTCACGGAGAAACCCATAGACCCTATCAAGGTATACTCAGATAAGGAGTTAATCAGGGAAGTTGAGAAGATTGCGTCTATCCTTGTGCCCGAAAAAGACTGGTCTGTTCGTATTGCTGCTATGCAGAGAATTGAAGGTCTTGTTCTAGGAGGCGCTACTGATTATCCTTGTTTTCGTGGACTTCTGAAGCAACTTGGCGGCCCTTTAAGTACACAATTGTCAGACAGAAGATCTAGCATTGTAAAGCAGGCTTGCCATTTATTGTGCTTTTTGTCAAAGGAACTCTTGGGCGATTTTGAAGCATATGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTCCTCGCGTGCTTCCCCGTATAGCCGATTGTGCTAAAAATGACCGCAATGCAGTACTTCGTGCAAGGTGTTGTGAATATGCTCTTTTGGTCCTAGAACATTGGCCGGATGCCCCAGAAATACTTCGTTCAGCTGAGTTATATGAGGATATGATAAAGTGTTGCGTTTCAGATGCAATGAGTGAGGTACGGTCTACTGCAAGGATGTGCTACCGAATGTTTGCAAAAACTTGGCCAGAGCGTTGTCGTCGCCTATTTACATCCTTTGACCCTGTTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACACAAGCGACATGCTTCACCTTCCATTCGTGATAGAGGTACACTGATGTCTTTACCCAGTCAAGCCTCTGCTTCGTCTAATCCACCTGGTTATGGAACATCTGCAATTGTTGCAATGGATAGAAGTTCAAGTTTATCATCAGGGACATCTGTCTCCTCTGGTGTACTTCTTTCACAGGCAAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAAAGTGTGTTGCACGCAAGCAAACAGAAGGTCACTGCTATTGAAAGCATGCTTAGAGGCTTGAATATATCTGATAAGCATAATTTATCGTCTCTTCGGTCATCAAGTTTGGATCTAGAAGTTGACCCTCCATCGGCTCGTGATCCGCCTTTCCCAGCTGCTGTCTCTGCATCCAATCATTTGACAAGCTCTTCAACAACAGAACCTACTGCATATGGTGTCTATAAAGGCAGTAACCGAAATGGTGGTCTGGGTTTGTCAGACATAATCACTCAAATTCAAGCTTCCAAAGATTCGGCCAAGTCATCATATCATAGTAATGTTGAAACTGAGCCATTACAATCATTATCTTCATATTCAACTAGAAGGCCTTCTGAAAGATTACATGAAAGAAGTTCTGTTGATGACATTAGTGACATCAGGGAGGCTAGGCGATTTACGAGCCACAACACTGATAAGCAGTATTTGGATGCCCCTTATAGAGATGGAAACTTTAGAGAATCACATAATAGTTATGTGCCTAATTTTCAGAGGCCACTAGTGAGAAAGAATGTAGCCGGTCGTATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAACCAGCTTTCTCCTGGAGAGATGCCGGGTTATACAGATGGACCAGCATCTCTTCATGAAGCTTTGAGAGAAGGACTCAGGTCAGGTTCTGACTGGTCTTCTAGGGTTGCTGCCTTTAACTATCTTCACTCATTGTTGCAGCAAGGTCCAAAGGGAACTCTAGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGACCCTCACCATAAAGTTGCACAGGCTGCTCTTTCAACACTAGCAGATATTGTTCCGGCGTGTCGAAAGCCTTTTGAGGGTTACATGGAAAGAATATTACCGCATGTCTTTTCTCGGTTAATTGATCCTAAAGAGGTTGTTAGGCAGCCATGTTCAACATCATTGGAAGTTGTTAGCAAAACTTACAGCATTGATTCTCTCTTACCTGCACTGTTACGTTCACTAGACGAACAAAGGTCTCCAAAGGCTAAATTGGCCGTGATTGAATTTGCAATCAATTCCTTTAATAAGCATACAATGAATGCAGAAGGTGCTGCTAATATTGGCATACTAAAATTGTGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAGAATACCAAGCTTAAAGAAGCAGCTATTACTTGCATTATATCAGTGTATACTCACTTTGATTCAATTGCTGTTCTTAATTTCATTCTGAGTTTGTCAGTGGAAGAACAAAATTCTTTGAGACGAGCCCTTAAACAGTACACTCCTCGCATTGAAGTAGAACTAATAAACTATATGCAGAACAAGAAAGAGCGACAACGTTCCAAGTCTTCCTATGATCCATCTGATGTTGTAGGAACATCATCTGAAGATGGGTATGTTGGTTTCTCGAGAAAAACTCAATACCTTGGAAGATATTCGGTTGGTTCCCTAGATAGTGATGGTGGTCGGAAGTGGAGTTCCCAGGATTCAACTCTTTTGAAATCCAGCCTTGGTCCAGCAGCATCTGTTGAAAGTGAGGATCATAATCAGAACCATAACCTTGAGACTGATTCTAATTTTGACAGTCTTAGCTCAAAACCAAAAGATCTTGCATATTCAGTCAATCCAATAGGTCAAAATTTCGGCGCTCAATCTAGCCAACTTGGACAAGTGGACAGTAGAATGAATTTCGAGGGTCTTTCAACTCCTCGTCTAGATGTTAATGGTCTGATGTCATTAGATCGTTTAGATGTTGGTGATGGCTATGCACATGACGAAGAACTTTCTTTTGCGTTGGAACCTAATTATCACTCAACTGAAGCTGTAAAGATTAATTCTATGTCAGACACGGGGCCCAGCATTCCTCAAATTCTTCATACGATATCCAATGCTAATGATGGAAGCCCTGTTTCAAGTAAACAGACTGCACTTCAACAGTTATTAGAAGCTTCTACAGCAAATGATCAGTCTGTTTGGACCAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTACTGGATGATTCCGATTCCTCAGTCAGAGAGCTTGCTCTTTCATTGATAGTAGAAATGCTCAAAAACCAGCAGAAAGATGCATTGGAGAATTCAGTTGAGATTGTAATTGAGAAGTTGCTTCATGTTACAAAAGATATTGTTCCTAAGGTTTCAAATGAAGCAGAGCGTTGTCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTTATTGCCCCTCTACTGGTTACCGAGGATGATAAAACGCTAGTCACTTGCATTAATTGCTTAACAAAGCTTGTGGGAAGGCTCACTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTACCTGCTCTATTTGAAGCTTTTGGAAACCAAAGTGCAGATGTTCGCAAGACAGTTGTTTTCTGTCTGGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTACAAGGCCTTAACAGCACACAGTTGAAGCTGGTCACCATTTATGCGAATCGAATCTCACAAGCCAGGACGGGAAAAACAATTGATGCCGTTCATGATTAG 4341 0.4262 MEEALELTRAKDTKERMAGVERLYQLLEASRKSLTSSEVTSLVDSCIDLLKDNNFRVSQGALQSLASAVVLSGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSSAWAHKSWRVREEFTRTVTSAINLFSSTELPLQRAILPPVLQLLSDPNLAVREAAILCIEEMYKQAGPQFRDELHRYNLPSSLVKDINARLEGIQPNVRSSNGIQSGYVTGEIKPLNPKKSSPKAKSSSREASLFGAEGDVTEKPIDPIKVYSDKELIREVEKIASILVPEKDWSVRIAAMQRIEGLVLGGATDYPCFRGLLKQLGGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEAYAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVPRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEILRSAELYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERCRRLFTSFDPVIQRLINEEDGGIHKRHASPSIRDRGTLMSLPSQASASSNPPGYGTSAIVAMDRSSSLSSGTSVSSGVLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLNISDKHNLSSLRSSSLDLEVDPPSARDPPFPAAVSASNHLTSSSTTEPTAYGVYKGSNRNGGLGLSDIITQIQASKDSAKSSYHSNVETEPLQSLSSYSTRRPSERLHERSSVDDISDIREARRFTSHNTDKQYLDAPYRDGNFRESHNSYVPNFQRPLVRKNVAGRMSAGRRRSFDDNQLSPGEMPGYTDGPASLHEALREGLRSGSDWSSRVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKEVVRQPCSTSLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHTMNAEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRIEVELINYMQNKKERQRSKSSYDPSDVVGTSSEDGYVGFSRKTQYLGRYSVGSLDSDGGRKWSSQDSTLLKSSLGPAASVESEDHNQNHNLETDSNFDSLSSKPKDLAYSVNPIGQNFGAQSSQLGQVDSRMNFEGLSTPRLDVNGLMSLDRLDVGDGYAHDEELSFALEPNYHSTEAVKINSMSDTGPSIPQILHTISNANDGSPVSSKQTALQQLLEASTANDQSVWTKYFNQILTVVLEVLDDSDSSVRELALSLIVEMLKNQQKDALENSVEIVIEKLLHVTKDIVPKVSNEAERCLTIVLSQYDPFRCLSVIAPLLVTEDDKTLVTCINCLTKLVGRLTQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKTIDAVHD 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02806 1446 Pfam HEAT repeat 160 188 IPR000357 GO:0005515
Vifa5g02806 1446 SUPERFAMILY ARM repeat 7 399 IPR016024 -
Vifa5g02806 1446 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Vifa5g02806 1446 MobiDBLite consensus disorder prediction 677 698 - -
Vifa5g02806 1446 SUPERFAMILY ARM repeat 288 1436 IPR016024 -
Vifa5g02806 1446 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Vifa5g02806 1446 Gene3D - 1 221 IPR011989 -
Vifa5g02806 1446 Gene3D - 1225 1438 IPR011989 -
Vifa5g02806 1446 SMART TOG_3 280 511 IPR034085 -
Vifa5g02806 1446 SMART TOG_3 3 224 IPR034085 -
Vifa5g02806 1446 SMART TOG_3 1201 1438 IPR034085 -
Vifa5g02806 1446 SMART TOG_3 782 1028 IPR034085 -
Vifa5g02806 1446 MobiDBLite consensus disorder prediction 1094 1123 - -
Vifa5g02806 1446 FunFam Protein peg1 264 511 - -
Vifa5g02806 1446 Gene3D - 798 1019 IPR011989 -
Vifa5g02806 1446 Pfam CLASP N terminal 801 991 IPR024395 -
Vifa5g02806 1446 Pfam CLASP N terminal 282 498 IPR024395 -
Vifa5g02806 1446 Gene3D - 265 505 IPR011989 -
Vifa5g02806 1446 PANTHER CLASP 32 1432 - -
Vifa5g02806 1446 MobiDBLite consensus disorder prediction 632 650 - -
Vifa5g02806 1446 MobiDBLite consensus disorder prediction 612 650 - -
Vifa5g02806 1446 Coils Coil 10 30 - -
Vifa5g02806 1446 MobiDBLite consensus disorder prediction 677 711 - -
Vifa5g02806 1446 MobiDBLite consensus disorder prediction 226 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02806 Vifa-Chr5 929947362 929968736 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02806 K16578 - gmx:100820523 2417.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02806 5 929947362 929968736 Vifa5g02806 5 929947362 929968736 ECH
Vifa5g02806 5 929947362 929968736 Vifa3g01216 3 316169021 316189168 PCT