Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01216 ATGGAGGAAGCACTGGAACTGGCACGCGCTAAAGACGGCAAGGAAAGGATGGCAGGCGTGGAGCGTCTCCACCAAGTTCTAGAAGCTTCTAGAAAGAGTCTCAGTTCAACCGAAGTTTCCTCTCTCGTCGATTGTTGCTTGGATCTCTTGAAGGATAGTAGTTTTAGGGTCTCTCAAGGCGCGCTGCAAGCTTTGGCTTCCGCCGCTGTTCTCTCCGGCGATCACTTTAAACTTCACTTCGATACACTTGTTCCTGCTATCGTTGATCGGTTAGGTGATGCTAAGCAACCTGTTCGTGATGCGGCTAGAAGGCTTTTGCTCACTCTCATGGAGGTTTCATCTCCTACAATAATTGTTGAAAGAGCGGGGTCTTTTGCTTGGACATGCAAAAACTGGAGAGTCAGAGAGGAGTTTGCGCGAACTTTGACATCTGCAATTGGTCTATTCTCATCTACTGAACTACCCCTCCAGCGGGCTATTCTTCCTCCTACTTTGCAATTGCTGAGTGATCCAAATCCTGTTGTCAGGGAAGCAGCTATTTTGTGCATTGAGGAAATGTTTGCACAAGCTGGGTCTCAATTTCGTGATGAACTTCAGCGCCACGACCTCCCTTCTTCTCTGGTGAAATATATTAATGCTAGGCTAGAGGGAATTCAACCAAAAGTCCAGTCTTCAAATGGTATTTCTAGTGGTTATAATGTTCCTGGTGAAATTAATCCTTCAAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCATCGAAGGGCACATCACTTTTTGGAGGAGAAGGTGATGTAAGTGAGAAAGCCATAGAACCTATCAAGGTGTATTCAGAGAAGGAATTCATCAGGGAAATTGAGAAGATTTCATCTATCCTTGTACCAGAAAAGGACTGGTCAATACGAATTGCTGCCTTGCAGAGAATTGAACGTCTTGTTTTGGGAGGAGCTGCTGATTATCCATGTTTTTTTGGAATCCTAAAACAGCTTGTTGGACCTTTAAGCACACAACTCTCAGATCGAAGGTCTACCATTGTGAAGCAGGCATGCCATCTATTATGCTTTTTATCGAAAGACCTCTTGGGTGATTTTGAAGCATGTGCTGAAACTTTCATACCAGTCCTTTTGAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTACGCAACTGCAAAGTTGCTCGTGTGCTTCCTCGGATTGTTGATTGTGCTAAAAATGATCGTAGTGCAATACTTCGTGCAAGGTGTTGTGATTATGCTCTTTTGATACTAGAACATTGGCCTGATGCACCAGAAATACAACGATCAGCAGATTTATACGAGGATATGATAAGGTGTTGTGTTTCAGACGCAATGAGCGAGGTGCGGTCGACTGCAAGGATGTGCTACAGAATGTTCGCAAAAACTTGGCCCGAGCGTTCCCGTCGTCTATTTTCATCCTTTGACCCTTCTATTCAAAGGTTGATAAATGAAGAGGATGGAGGCAAACATAGGCGACATGCATCACCTTCCATTCGTGATAGAAGTGCACCAATGCCATCAACTAATCAAGCATCAAATCCCGCTAATCTGACTGGTTATGGAACTTCAGCTATTGTTGCCATGGACAGAAGTTCTAGTTTATCAACGGGGACTTCTGTCTCCTCTGGTGTTCTTCTTTCACAAGCTAAGTCACTTGGTAAAGGTACAGAACGTAGTTTAGAAAGTGTACTGCATGCAAGCAAACAGAAGGTCACTGCTATTGAGAGCATGCTTAGAGGTTTGGATTTGTCAAATAAGCATAATTCATCTGCTCTGCGATCTTCAAGTTTGGATCTAGGAGTTGACCCTCCCTCATCTCGTGATCCTCCATTCCCTGCTTCTGTTTCAGCCTCTAATCATCCGACCATCCTTTCAACAACCGAATCATCTGGTTTGGGTGTCAATAGAGCTAGTAGCCGGAACAATGATTTTTCAGCATACACAAATAAAAGAGCTACTGAAAAATTACAAGGAAGAAGTTCTGTTGATGAAAACAGTTATATCAGGGAGACTAGGCGATATACGAGCCCCACTGTGGATAGGCAGTATATGGATACCCTCTGTAGAGATGGAAACTTTAGGGATTCACAGAATAGTCAAGTGCCTAATTTTCAGAGGCCTCTATTGAGAAAGAACGTAACTGCACGCGTGTCTGCTGGCAGGAGAAGGAGTCTTGATGATAGTCAATTATCTATTGGAGAGATGTCAAATTATGCAGATGGACCGGCATCTCTTCATGAAGCTCTGAGTGAAGGACTTAGTTCTGGTTCTGACTGGTCTGCCAGGATTGCTGCCTTTAATTACCTTCACTCGTTATTGGAGCATGGTCAAAAAGGAGTTCAAGAAGTAGTTCAGAATTTTGAGAAAGTAATGAAGTTATTTTTTCAGCACTTGGATGACCCCCATCATAAAGTTGCACAGGCGGCTCTCTCCACACTTGCAGATATTATTTGTACATGCCGAAAGCCGTTTGAGAGTTACATGGAACGAATGTTACCCCATGTGTTTTCTCGTTTAATTGACCCCAAAGAGCTAGTCAGGCAAGCATGCTCTACGACTTTGGAGGCTGTTGGTAAAGCGTACAGTATAGATTCTCTGTTGCCTGCATTGCTACGATCTCTTGATGAACAAAGGTCCCCTAAAGCTAAATTGGCTGTTATTGAGTTTGCAATCAATTCCTTTAACAAGCACACAATGAACCCAGAAGGTGCTGCTAATATTGGAATCCTAAAATTATGGCTTGCCAAGTTAGCCCCATTGGTTCATGATAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCAATATACTCCCACTTTGATTCATCTGCAGTTTTGAATTTTATTCTTAGTTTGTCCGTTGATGAACAAAATTCGTTGAGACGAGCCCTTAAACAGCGCACCCCTCGCATTGAGGTAGACTTAATGAACTATCTGCAGAACAAGAAAGAGCGGCGTACTAAATCTTCCTATGATCCATCTGATGTTGTAGGAACATCCTCTGAAGAGGGATATGCTGGTTTGTCTAGGAAAGCTCATTATATGGGGAGGTATTCTGGCGGTTCTCTAGATAGTGACGGTGGCAAGAAATGGAGTTCCCAAGATTCAAACTTGATTATAGCCAGTCTTGGCCAACCAGCCTCTGATGAAACAGAGGAACATTTGTATCATAATCTTCAGACTGATTGTGATAATGGTATTGTTGGTTCAAAAACCAAAAATCTTGCTTACCCAGTCAATTCAATGGATCAAAGCTTTGGCTTTCAAACTGACCAACTTGGATATGAGGATAGTAGCATTAACTTTGAAGGCATATCATCTGATGTGGATGTTAATGGTCTGATGTCATTAGAACATTTAAATATTTCCAAATTGAACCATAATCATCACTCAGCTGAAGATGTGAAGGGAAACTGCATGACAAACATAGGACTCAGCATTCCTCAAATTCTTCATATGATATGCAGTGGGGGTGATGGAAGCACTGTTTCAAGTAAGCGGACTGCACTTCTACAGTTAGTTGAAGCTTCTGCAGAAAATGATCATTCTGTTTGGATCCAGTACTTCAATCAGATTTTGACTGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATCAGGGAGCTTGCTCTTTCATTGATAGTTGAAATGCTTAAAAATCAGAAAGATGCCATGGAAAATTCAGTTGAGATTGTAATTGAAAAGCTCCTTAATGTTACAAAGGATATTGTTCCCAAGGTTTCAAATGAAGCGGAGCACTGCCTGACAATTGTTTTATCTCAGAATGATCCATTTAGATGCTTAAGTGTTATTATTCCTCTTCTGGTTACTGAGGACGAGAAAACTCTAGTCACTTGTATAAATTGCTTGACTAAGATTGTGGGGCGGCTCTCTCAGGAGGAATTGATGGCTCAGTTACCCTCATTTCTGCCTGCATTGTTTGAAGCTTTTGGAAACCAGAGTGCGGATATTCGTAAGACTGTTGTTTTCTGTCTAGTGGATATCTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGGAAGGACTTAATAGCACACAACTGAAGTTGGTTACTATTTATGCAAATCGTATCTCACATGCAAGGACAGGAAAATCAATTGATGCTGCTACCGATTAG 4209 0.4191 MEEALELARAKDGKERMAGVERLHQVLEASRKSLSSTEVSSLVDCCLDLLKDSSFRVSQGALQALASAAVLSGDHFKLHFDTLVPAIVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWTCKNWRVREEFARTLTSAIGLFSSTELPLQRAILPPTLQLLSDPNPVVREAAILCIEEMFAQAGSQFRDELQRHDLPSSLVKYINARLEGIQPKVQSSNGISSGYNVPGEINPSSVNPKKSSPKAKSSSKGTSLFGGEGDVSEKAIEPIKVYSEKEFIREIEKISSILVPEKDWSIRIAALQRIERLVLGGAADYPCFFGILKQLVGPLSTQLSDRRSTIVKQACHLLCFLSKDLLGDFEACAETFIPVLLKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIVDCAKNDRSAILRARCCDYALLILEHWPDAPEIQRSADLYEDMIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPSIQRLINEEDGGKHRRHASPSIRDRSAPMPSTNQASNPANLTGYGTSAIVAMDRSSSLSTGTSVSSGVLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLDLSNKHNSSALRSSSLDLGVDPPSSRDPPFPASVSASNHPTILSTTESSGLGVNRASSRNNDFSAYTNKRATEKLQGRSSVDENSYIRETRRYTSPTVDRQYMDTLCRDGNFRDSQNSQVPNFQRPLLRKNVTARVSAGRRRSLDDSQLSIGEMSNYADGPASLHEALSEGLSSGSDWSARIAAFNYLHSLLEHGQKGVQEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIICTCRKPFESYMERMLPHVFSRLIDPKELVRQACSTTLEAVGKAYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHTMNPEGAANIGILKLWLAKLAPLVHDKNTKLKEAAITCIISIYSHFDSSAVLNFILSLSVDEQNSLRRALKQRTPRIEVDLMNYLQNKKERRTKSSYDPSDVVGTSSEEGYAGLSRKAHYMGRYSGGSLDSDGGKKWSSQDSNLIIASLGQPASDETEEHLYHNLQTDCDNGIVGSKTKNLAYPVNSMDQSFGFQTDQLGYEDSSINFEGISSDVDVNGLMSLEHLNISKLNHNHHSAEDVKGNCMTNIGLSIPQILHMICSGGDGSTVSSKRTALLQLVEASAENDHSVWIQYFNQILTVVLEVLDDSDSSIRELALSLIVEMLKNQKDAMENSVEIVIEKLLNVTKDIVPKVSNEAEHCLTIVLSQNDPFRCLSVIIPLLVTEDEKTLVTCINCLTKIVGRLSQEELMAQLPSFLPALFEAFGNQSADIRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQLKLVTIYANRISHARTGKSIDAATD 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01216 1402 PANTHER CLASP 32 1388 - -
Vifa3g01216 1402 Gene3D - 766 990 IPR011989 -
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 630 682 - -
Vifa3g01216 1402 Pfam HEAT repeat 160 186 IPR000357 GO:0005515
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 520 536 - -
Vifa3g01216 1402 FunFam Protein peg1 267 514 - -
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 226 262 - -
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 501 536 - -
Vifa3g01216 1402 Coils Coil 1238 1258 - -
Vifa3g01216 1402 Gene3D - 1183 1393 IPR011989 -
Vifa3g01216 1402 Gene3D - 1 222 IPR011989 -
Vifa3g01216 1402 SMART TOG_3 753 998 IPR034085 -
Vifa3g01216 1402 SMART TOG_3 1155 1396 IPR034085 -
Vifa3g01216 1402 SMART TOG_3 283 515 IPR034085 -
Vifa3g01216 1402 SMART TOG_3 3 224 IPR034085 -
Vifa3g01216 1402 SUPERFAMILY ARM repeat 290 1391 IPR016024 -
Vifa3g01216 1402 SUPERFAMILY ARM repeat 7 403 IPR016024 -
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 606 620 - -
Vifa3g01216 1402 Gene3D - 267 510 IPR011989 -
Vifa3g01216 1402 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 226 266 - -
Vifa3g01216 1402 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Vifa3g01216 1402 MobiDBLite consensus disorder prediction 606 682 - -
Vifa3g01216 1402 Pfam CLASP N terminal 286 501 IPR024395 -
Vifa3g01216 1402 Pfam CLASP N terminal 772 966 IPR024395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01216 Vifa-Chr3 316169021 316189168 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01216 K16578 - gmx:100801377 2275.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01216 3 316169021 316189168 Vifa3g01216 3 316169021 316189168 ECH
Vifa5g02806 5 929947362 929968736 Vifa3g01216 3 316169021 316189168 PCT