Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02795 ATGACTTGCATTTCGAAACCATTCAACGCCACCGTCTTCCACACACATTCATCCCCTTTTCCTCAATTTCCACCCCGCCTCCATTCTAACGCACTATACTCTCACACATTCCGATCCCACGCCGTTCCTCCTCTTCCCCAAAACCAAATCATCATCGGATGCGGAATGACGGCGGTGGATTTCTTAGCTACCGTCGATGGATATCCGAAACCGGACGATAAGATCCGATCAACCTCCTCCAAGGTGCAAGGAGGTGGAAATGCTGCTAATGCTTTAACATGTGCGGCTCGACTCGGATTGAAACCAAAGCTTATTTCCAAGGTTGCTGATGATGCTCAAGGAAAGAGCATATTGGAGGAACTTGAAGCTGATGGTGTTGATACTTCCTTTATCGTTGTATCCAAGGGTGGCAGTTCAACATTTTCATATGTACTTGTAGACACTCAAACAAAAACTCGCACAAGTATTTACACACCTGGAGATCCTCCCTTAATGCCTGATGATTTGTCTCAGTCAATGTTGTTATCTGCATTTGATGGAGCAAGATTAGTTTATTTTGATGGAATGTCAATCGAAACTGCTCTATTTGTTGGACGAGAGGCAGCCCGCAATAATATTCCTATTTTAGCTGAGGCAGAATCACCAAGGGAAGGGTTGGATGAGCTATTGAAGCTTGCTGATTTTGTTGTATGTTCAGCAAAGTTTCCACTGGCTTGGACACAGGCACCGTCTATCCCTAGTGCATTGGTTTCCATGCTTATAAGATTGCCAAATATCAAGTTTGTGATTGTGACTCTCGGTGAAGATGGTTGTCTAATGTTGGAAAGAAGTACAAATGATGATGTCGGTGTGGAAGAAATGAATGTAGAGAGCTTTCTAGAACTCTTGTATAGAGAGAAAGATGATAGCTTGGCTAATCCAACCTGTATATCATCGAATGGAATTACAGGCCATGCAAAAGCAATCATGGAGGCGGTGAGAAAGTTCAGATCAAATGGAATTGGCACAGTTTGTGGGAGATTCTTTATTGGAACAGCAGAGAAGATACCAGATTCTGAGCTTATTGATACAACTGGTGCCGGAGATGCATTTATTGGAGCGATTATGTATGCCATCTGCTCAAACATGGTACCGGAGATAATGTTACCCTTTGCTGCAAAAGTGGCAGCTGCCAAGTGTAGAGCTTTGGGAGCTCGGACCGGTCTTCCTCATCGAACAGATCCATGCTTAGCATCCTTTTTATGCTGA 1248 0.4383 MTCISKPFNATVFHTHSSPFPQFPPRLHSNALYSHTFRSHAVPPLPQNQIIIGCGMTAVDFLATVDGYPKPDDKIRSTSSKVQGGGNAANALTCAARLGLKPKLISKVADDAQGKSILEELEADGVDTSFIVVSKGGSSTFSYVLVDTQTKTRTSIYTPGDPPLMPDDLSQSMLLSAFDGARLVYFDGMSIETALFVGREAARNNIPILAEAESPREGLDELLKLADFVVCSAKFPLAWTQAPSIPSALVSMLIRLPNIKFVIVTLGEDGCLMLERSTNDDVGVEEMNVESFLELLYREKDDSLANPTCISSNGITGHAKAIMEAVRKFRSNGIGTVCGRFFIGTAEKIPDSELIDTTGAGDAFIGAIMYAICSNMVPEIMLPFAAKVAAAKCRALGARTGLPHRTDPCLASFLC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02795 415 CDD ribokinase_group_B 50 404 - -
Vifa5g02795 415 Pfam pfkB family carbohydrate kinase 347 404 IPR011611 -
Vifa5g02795 415 Pfam pfkB family carbohydrate kinase 55 278 IPR011611 -
Vifa5g02795 415 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 39 414 - -
Vifa5g02795 415 Gene3D - 50 400 IPR029056 -
Vifa5g02795 415 SUPERFAMILY Ribokinase-like 50 406 IPR029056 -
Vifa5g02795 415 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 356 369 IPR002173 GO:0016301
Vifa5g02795 415 PRINTS Ribokinase signature 80 99 IPR002139 GO:0016301
Vifa5g02795 415 PRINTS Ribokinase signature 53 74 IPR002139 GO:0016301
Vifa5g02795 415 PRINTS Ribokinase signature 262 273 IPR002139 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02795 Vifa-Chr5 924664854 924669568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02795 - - gmx:100792838 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02795 5 924664854 924669568 Vifa5g02795 5 924664854 924669568 ECH
Vifa5g02795 5 924664854 924669568 Vifa3g01231 3 320605681 320611067 PCT