Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01231 ATGTCCAATCTCTGCACTTCTTCTTCTTATACTGCTGCCTCTTTCAACTTCAACCTTCACCCTCTCAAATTCCACAACTCATCAAGGAACCATCGCAACAGAAATTTTCGGCTCAAAATGTGCTCCTCCGTTCCTCCAAACGTCACCGTTGTTGGTTGTGGATCGTTGACCGTCGATTTCTTGGCTACCGTTGCTGCTTACCCTAAACCAGATGACAAAATCAGAACCACCACTTTCAAGGTTCAAGGCGGTGGCAATGCAGCCAATGCTTTAACCTGTCTCGCTCGCTTAGGTCTAAACACAAGGCTCATTTCTAAGATTGCAAATGACACTCAAGGCAGGGGTATGTTAGACGAGCTACAGGTCGATGGCGTAGATACATCCTTTATTGTGGTATCTAAAGAGGGAATTTCACCATTTACATATATTATTGTGGACAACGAAACGAAAAGTCGTACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGTATTGGATGGAGCTAGCATTGTATATTTTGATGGGAGGTTGTATGAAACTGCTCTAGTTGTTGCCCATGAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGACCAAGGGAAGGGTTGGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCAAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCACAAGCACTTGTTTCTATCCTTTTAAGGCTGCCCAATGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATAATGCTTGAGAGAAGTGTTAATGCAAGTCCTTCCACGGAAGACGTGGATGTAGACAACTTATTGGAATCACTGTTGTTAAGAAAGGATAAGAGTGCCTCCGTTCCAACCTGCATATCATCGTCAGTGGCAAAATTGAAGGCAGAAGGAATAGGAACGGTTACCGGGAAACTCTACATTGGTACAGCGGAGAGCATTCCACCATCAGAGCTTATTGATACCACTGGTGCTGGCGATGCATTTATTGGAGCTGTGATCTATGCTATTTGTTCGAAGTTCTCACCAGAGACAATGCTGCCCTTTGCTGCTAATGTGGCAGGTGCGAAATGCAGGGATCTAGGAGCACGAAGTGGTCTTCCATACCGTGCAGACCCACACTTAGCATCATTTGTTAAATAG 1209 0.4376 MSNLCTSSSYTAASFNFNLHPLKFHNSSRNHRNRNFRLKMCSSVPPNVTVVGCGSLTVDFLATVAAYPKPDDKIRTTTFKVQGGGNAANALTCLARLGLNTRLISKIANDTQGRGMLDELQVDGVDTSFIVVSKEGISPFTYIIVDNETKSRTCIHTPGYPPMIPQDLSESSLLSVLDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPQALVSILLRLPNVKFVAVTLGKDGCIMLERSVNASPSTEDVDVDNLLESLLLRKDKSASVPTCISSSVAKLKAEGIGTVTGKLYIGTAESIPPSELIDTTGAGDAFIGAVIYAICSKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPHLASFVK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01231 402 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 37 401 - -
Vifa3g01231 402 Pfam pfkB family carbohydrate kinase 52 276 IPR011611 -
Vifa3g01231 402 Pfam pfkB family carbohydrate kinase 333 390 IPR011611 -
Vifa3g01231 402 PRINTS Ribokinase signature 261 272 IPR002139 GO:0016301
Vifa3g01231 402 PRINTS Ribokinase signature 52 73 IPR002139 GO:0016301
Vifa3g01231 402 PRINTS Ribokinase signature 79 98 IPR002139 GO:0016301
Vifa3g01231 402 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 343 356 IPR002173 GO:0016301
Vifa3g01231 402 SUPERFAMILY Ribokinase-like 49 394 IPR029056 -
Vifa3g01231 402 CDD ribokinase_group_B 50 391 - -
Vifa3g01231 402 Gene3D - 48 387 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01231 Vifa-Chr3 320605681 320611067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01231 - - gmx:100802550 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02795 5 924664854 924669568 Vifa3g01231 3 320605681 320611067 PCT