Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02782 ATGGCTTCAGATTCTAATTCAAATCTTAGAATCACCATTGAAAGAAATCCAACTCAGTCACGTTTAGCTGAATTAAACATCAAGTGTTGGCCCAAATGGGGTTGTTCACCAGGAAAGTATCAGTTGAAATTTGATGCAGAAGAAACATGTTATTTATTGAAAGGAAAAGTGAAAGCATACACAAAAGGGTCATCAGATTTTGTAGAGTTTGGAGCTGGAGATTTAGTGACAATTCCAAAAGGACTGAGTTGTACTTGGGATGTTTCTGTCGCTGTTGACAAGTACTACAAATTTGAATCATCTTCTTCTAGTTCTTCTTCATCATCTTTACCATCTTGTTAA 342 0.3567 MASDSNSNLRITIERNPTQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSDFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSSSSSSSSSLPSC 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02782 113 SUPERFAMILY RmlC-like cupins 19 96 IPR011051 -
Vifa5g02782 113 Pfam EutQ-like cupin domain 23 96 IPR008579 -
Vifa5g02782 113 CDD cupin_TM1112-like 30 98 - -
Vifa5g02782 113 PANTHER OS04G0445200 PROTEIN 5 99 - -
Vifa5g02782 113 Gene3D Jelly Rolls 2 98 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02782 Vifa-Chr5 921742140 921742587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02782 - - gmx:100793722 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02782 5 921742140 921742587 Vifa5g02782 5 921742140 921742587 ECH
Vifa5g02782 5 921742140 921742587 Vifa3g01240 3 320918933 320919349 PCT