Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02667 ATGTTTAGCAGACCAAGTAGTTCCGGTGCTTTTAGTATATTCAAATGGAAAAAGCAAAGTCCTTCATCTCTGACAAGAGGTTTACTTAATGATTCGCCGGAGATTGAGTTGTCTGCATACGGAAAACTCCCAAGTCCAGGAAGTGAGAGCCCTTCAGATCTCCTTAATAGCGAAAGCGTATATGTAGAACCGATTGCTGATTTGGATCTCTTCTTTGAAAGACTTTACAGCTACTACTGCGAGAAAGGGCTATGGTGCATTGTTATAAAGTGGATTGTTGAACTTCTAAGTCTCGGGTTCACCATATGCTTTTCAGGATTTTTTTTATTATATGTTGATTGGAATGGACTCCGTAATGCAAAATGTGGGATGGATGCAGTCGAATCTGGAATTAAGCCCTGTGATCTTAGCAAAGAAGCTCTTAATCAACACCCTTTAACCCCCCTGACACTTACCAAAGCTATTATTGTTGGATACTTGGGAATTTTTTCGATCTATTGGATATTTTGCTTTTTGAGATTCTTTGCTCAACTAAAAGATACTCTAGAAATCCGCCAGTTTTACTACAACAGTCTTCATGTTACTGACAATGAAATTCAAACTATGCCCTGGGCCACAATCGTTGACAAAGTTGTTCTCGTTCAGAGTACTCGAAAGCTATGCGTGCTAAAGGATCTTTCTGTTCATGATATAGTCATGAGACTGATGCGGAAGGAGAACTACTTAATCGGAATGCTCAACAAGGGTGTGCTTGCTTTCCCCATTTCACAATGGTTTCCAGGTGCTGGCCCTACAGTTCAATCTAGTCCTGATGGAGCACAACATCGTTTAGTACTTACCAAGACCCTTGAATGGACTTTAAACTGGTGCATCCTGCAGAGCATGTTTGATCGGAACTTCCATGTCAGAAGGGATTTTGTGTCAAATCCCAAGACATTAAAGAAAAGGCTTATGGTAGTTGGGTTTGCAATGCTTTTACTTTCTCCATTCCTTGTCATATTCATGCTGGCATATCTATTTCTGAAGCATGCTGAGCAATTTTATAATCATCCAAGCACTGCATCGTCTCGAAGATGGTCAAATTTGTCTAGGTGGATGTTTAGGGAATTCAATGAGGTGGACCATCTCTTCAGGCATCGGATTAATAACAGTGTATTGCATGCTTCTGATTATCTGAAGCAATTTCCATCACCTATCATATCTATCATTGCAAAATTCATATCTTTTGTATCTGGTGGATTTGCTGCAGTTCTGATAATTATTGCTTTTCTCGAGGAGTCTCTTCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACGGCTATTAGCCGGGCTGCAATTGAAAATGAGCTTCTTGTATTAAATCCTGAGGGAGCAATATCTATGGTGGTTCAATATACACATTATATGCCTAAGAGATGGCGTGGCAAAGAAATTACTGAACTGGTTCGCATTGAGTTTGAAACCTTATTCCAGTATACTGGAATGATGTTACTTGAAGATATGGCTTCAATTTTCCTCACTCCATATTTACTTCTATTTGTTGTCCCAAAGCGAGTTGATGATATCTTGCAGTACATTGCTGATTTCACTGTAAATGTTGAAGGTGTTGGGCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAGCATGGAAACACTCATTACGGTTCCCCATACAATGCCCCTCGTATCCGGAGGAGTTCACAGGGAAAGATGGAGAAATCGTTGTTGAGTTTTCAGAGTAGTTACCCATCATGGGAACCAAATGCTCAGGGGAAGCAGTTTTTTCAAAATCTAAGAACATTCAGAGAACAGAAGTTATCAGCAAATGGAAACCGACATAGATCTTCACCTCCTAGAATGTGGAGGGGTAGTCCCAATATGGGAGACAATGGAGACAGAAACCGATTTATATCTGTGGAAATGCCACACAGTACTTTTGAAACTGGCAATCACTTGGGTTCTTTGTGGCTGATAGAAGCCAACCAGAACAATCATCCCTATCTTCTTGATTGGTACTACACATCTCGACCTCATGAAGCAACTTCGAGTGATGTTCCATTCGAACCATATGGAGTAACAGAACATTATTCCAGAGACTATTCAATGCCCTCCAACTTGCAACAGAACGAACCCGAGTATGAAGAATACTCTAATCAGTACCAAGAGGAACGGGCTGGATCTCATCTTGGGGCTTCCACGTCAGCTCCCATCTTCAGGGAGAGCCTTATTAACGATCAAAATTATAATGAACTTCCCCAAGCTACTAGAAGCCAATGGTGGGCTAGAAGTCGCCTACATAGTGGAAAGGCTCAGACAAGCTCCTTTGAGCCTCCAGATTTTAATGATCAAACAGAGTGGGCTAGAAGTCGCCTAAATAGTGGAAAGGCTCAGACAAACTTCTTTGAGCGTCCAGATTTCACTGACCAGACAGCATATAATTATCATGACAAGTTTTCTGATAGGGGCTCCGAGGATCAAGATCAAGAACAATACTCTTACTGGAGAGATCATCACGACAAATTATCTAGAACAGCACTGACAGATGACTTAGAGGCCGGGGAATTTAATCTACATTTTGGTGATATATATAGCAGACCTCCAGAAACTCCAACTGCAGGCTTTTGA 2658 0.4097 MFSRPSSSGAFSIFKWKKQSPSSLTRGLLNDSPEIELSAYGKLPSPGSESPSDLLNSESVYVEPIADLDLFFERLYSYYCEKGLWCIVIKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLSKEALNQHPLTPLTLTKAIIVGYLGIFSIYWIFCFLRFFAQLKDTLEIRQFYYNSLHVTDNEIQTMPWATIVDKVVLVQSTRKLCVLKDLSVHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPTVQSSPDGAQHRLVLTKTLEWTLNWCILQSMFDRNFHVRRDFVSNPKTLKKRLMVVGFAMLLLSPFLVIFMLAYLFLKHAEQFYNHPSTASSRRWSNLSRWMFREFNEVDHLFRHRINNSVLHASDYLKQFPSPIISIIAKFISFVSGGFAAVLIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIENELLVLNPEGAISMVVQYTHYMPKRWRGKEITELVRIEFETLFQYTGMMLLEDMASIFLTPYLLLFVVPKRVDDILQYIADFTVNVEGVGHVCSFSTFDFQEHGNTHYGSPYNAPRIRRSSQGKMEKSLLSFQSSYPSWEPNAQGKQFFQNLRTFREQKLSANGNRHRSSPPRMWRGSPNMGDNGDRNRFISVEMPHSTFETGNHLGSLWLIEANQNNHPYLLDWYYTSRPHEATSSDVPFEPYGVTEHYSRDYSMPSNLQQNEPEYEEYSNQYQEERAGSHLGASTSAPIFRESLINDQNYNELPQATRSQWWARSRLHSGKAQTSSFEPPDFNDQTEWARSRLNSGKAQTNFFERPDFTDQTAYNYHDKFSDRGSEDQDQEQYSYWRDHHDKLSRTALTDDLEAGEFNLHFGDIYSRPPETPTAGF 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02667 885 MobiDBLite consensus disorder prediction 618 639 - -
Vifa5g02667 885 PANTHER APG9 AUTOPHAGY 9 2 833 IPR007241 GO:0006914
Vifa5g02667 885 Pfam Autophagy protein ATG9 63 556 IPR007241 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02667 Vifa-Chr5 887823085 887828146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02667 K17907 - gmx:100777405 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02667 5 887823085 887828146 Vifa5g02667 5 887823085 887828146 ECH
Vifa5g02667 5 887823085 887828146 Vifa3g01322 3 339185209 339189056 PCT