Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01322 ATGTTTACTAGGTCAAGAGATGCTAGTGCTTTTAGTATATTCAAATGGAAGCGTCGAGGTGAATCTTCATCAGTGACGGAAGGTTTACTTCAGGATGTTACTCTGGAGATTGAGTTGTCTGATTACAGAAGGATTCCGAGTCCGGGTAGTGAGAGTCCTTCAGGGCTTCTTAACGATGAGAACCGTAATGTTGAGGCGATTTCTGATTTGGATATCTTCTTTGAAAGACTTTACAGCTACTATTGTGAGAAAGGGTTATGGTGCATCGTTATAAAGTGGGTTGTTGAACTTCTGAGTCTGGGATTCACCATATGTTTTTCGGCTTTTTTCTTACTATATGTTGATTGGAATGGACTCCGTAATGCAAGATGTGGGATGGATGCAGTTGAATCTGGAATGAAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTAACTCCGTTAACACTTAGCAAAGCTATTATTGTTGGATACTTATGCATATTTTCTATCTATTGGATATTTTGCTTCTTAAGATTCTTTGCTCAACTGAAGTATACTCTGGAAATCCGAGAGTTTTACTACAATAGTCTCCATGTTACAGATAGTGAAATTCAAACAATGCTGTGGGCTACAGTTCTTGAAAAGACTGTTCTTGTGCAAAGCACTAGAAAACTCTGCGTGGTGAAGGATCTTAATGCTCATGACATTGTGATGAGGTTAATGCGGAAGGAGAACTACTTGATCGGAATGCTCAACAAGGGTGTGCTTGCTTTTCCCATTTCTAAATGGATTCCAGGTGCTGGTCCAACAGTGAAATGCAGTACAAATGGAACACAATATCGTCTAGTACTAACTAAGACACTTGAGTGGACTTTGAATTGGTGCGTCCTGCAAAGCATGTTTGATAGTAACTTTTGTGTCAGAAGAGATTTCGTGTCAAATTCAAGGACATTAAAGAAAAGGCTTATCTTAGTTGGGCTTGCAATACTTTTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTCTTTCTGCGGCATGCTGAACAATTTTACAATCACCCAAGTACAGCATCATCTCGAAGATGGTCAAATTTGTCAAGATGGGTCTTTAGGGGATTCAATGAGGTGGACCATCTCTTCCGGCATCGTATTAATAACAGCGTGTTACATGCTTCTGACTATCTCAAGCAATTTCCTTCACCCATCATATCTATCATTGCAAAATTCATCTCGTTTGTATCTGGTGGCTTTGCTGCAGTTCTGATCATCATTGCTTTTCTAGAGGAATCTCTGCTAGAGGGTCATATATTTGGTCGAAACTTATTGTGGTATGCGGCTGTTTTTGGAACCATAACTGCTATTAGCCGGGCTGCAATTGTAAATGAACTTCTGGTCATAGATCCTGAAGGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAGCAAAGTACTGAAACGGTCCGAACTGAGTTTGAAACCTTATTCCAGTATACTGGGATGATGCTACTCGAGGAGATGGCCTCAATTTTCCTTACTCCATACTTACTCCTATTTGTTGTCCCAAAGCGTGTCGATGATATCTTGCAGTTCATTGCTGATTTTACCGTACACGTTGAAGGTGTTGGCCATGTATGCAGTTTCAGTGTCTTTGATTTTCAAAAGCATGGAAACAGTAGTTATGGTTCCTCATCTGATTCACCTCGCGAGCAAAGGAGTTCCCAGGGGAAGTTGGAGAAATCATTTTTGAGCTTCCAAAGTAGTTATCCTTCATGGGAACCAAATGCTGAAGGGAAGAAGTTTTTGCTAAATCTGAGAACATTCAGAGAGCAAAAATCATCATCAGGGCATGTAAACCGACAAGGATTTCCCCCTCTCAGATTGTGGAGAGGCAGTCCCGACACGAGAACCAATGGAGACAACAGAAATAGGTTTATTTCAAGAGAAATGCGGAACAGCACTTTTGTAACTGGCAATCACTTAGGTTCGTTGTGGTTAATTGATGCTAACAATCAAAACAATCACCCGTATCTGCTCGATTGGTACTATACTTCCCGACCTCATGATGCGACCTCAAGAGATGTTCAAACAGATCCATTTGAAGAATCTCCACATAACTACAGAGATTGGGTGCACTATACTTCCCGACCTCATAATGCGACTTCTAGAGATGTTCCAACAAATCTGTTTGAAGAAACTCCTCATCACTCCAGAGATTGGATGCCGTCCAGCTTGACAAAGAATGATCCTGAGTACGAAGAATATCATGATGATCGTGCCAATTCCCATCTCGGGGCATCCGTATCTGCTCCCATCTTTAGGGAAAGCATAATTCGGAATCAAGATTCTGATGATCTACACCACCATACCAGGGGTCATTGGTGGGCTAGAAGTCACCATCATCAGCAGGGTGGACATGATCAATCAAGCCTTTGGGAGCCTCCAGATTTCAATCACGAAAGAGCATTCAATAATTACGACGATAAATTATCTGAGACAGGGTCAGAGAATCAAGACCAAGAGCAAGAATTGTATTGGAGAAACTCAGATTATCACAAATCATTTCATACTGCACATACATATGACTTAGAATCAGGAGAAATCAATCTTCATTTTGACGACATTTATAAAAGACCTCCAGAAAATTCCTCTATAAATCCTTTTGAGTGGTGA 2691 0.408 MFTRSRDASAFSIFKWKRRGESSSVTEGLLQDVTLEIELSDYRRIPSPGSESPSGLLNDENRNVEAISDLDIFFERLYSYYCEKGLWCIVIKWVVELLSLGFTICFSAFFLLYVDWNGLRNARCGMDAVESGMKPCDLAKEALHQHPLTPLTLSKAIIVGYLCIFSIYWIFCFLRFFAQLKYTLEIREFYYNSLHVTDSEIQTMLWATVLEKTVLVQSTRKLCVVKDLNAHDIVMRLMRKENYLIGMLNKGVLAFPISKWIPGAGPTVKCSTNGTQYRLVLTKTLEWTLNWCVLQSMFDSNFCVRRDFVSNSRTLKKRLILVGLAILLLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWVFRGFNEVDHLFRHRINNSVLHASDYLKQFPSPIISIIAKFISFVSGGFAAVLIIIAFLEESLLEGHIFGRNLLWYAAVFGTITAISRAAIVNELLVIDPEGAMSMVVQHTHYMPKRWRGKQSTETVRTEFETLFQYTGMMLLEEMASIFLTPYLLLFVVPKRVDDILQFIADFTVHVEGVGHVCSFSVFDFQKHGNSSYGSSSDSPREQRSSQGKLEKSFLSFQSSYPSWEPNAEGKKFLLNLRTFREQKSSSGHVNRQGFPPLRLWRGSPDTRTNGDNRNRFISREMRNSTFVTGNHLGSLWLIDANNQNNHPYLLDWYYTSRPHDATSRDVQTDPFEESPHNYRDWVHYTSRPHNATSRDVPTNLFEETPHHSRDWMPSSLTKNDPEYEEYHDDRANSHLGASVSAPIFRESIIRNQDSDDLHHHTRGHWWARSHHHQQGGHDQSSLWEPPDFNHERAFNNYDDKLSETGSENQDQEQELYWRNSDYHKSFHTAHTYDLESGEINLHFDDIYKRPPENSSINPFEW 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01322 896 MobiDBLite consensus disorder prediction 803 824 - -
Vifa3g01322 896 PANTHER APG9 AUTOPHAGY 9 2 839 IPR007241 GO:0006914
Vifa3g01322 896 MobiDBLite consensus disorder prediction 620 648 - -
Vifa3g01322 896 Pfam Autophagy protein ATG9 64 558 IPR007241 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01322 Vifa-Chr3 339185209 339189056 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01322 K17907 - gmx:100809347 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01322 3 339185209 339189056 Vifa3g01322 3 339185209 339189056 ECH
Vifa5g02667 5 887823085 887828146 Vifa3g01322 3 339185209 339189056 PCT