Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02647 ATGGATGACATACAGACAGATAATGATGCTAAACCCAGCTTTACACAGATCTTGGTAATCTCATCTATTGGGTTGATATTTTTCATAGCATTGCGTTATCATCTCAAAAAGATTCGAGATCAAAAGATCATTCCGCGTTTAAGATTATCGCGTGCAGGTCACCCCCCAAAGCTTGAAAGATTCTCTCATTACGTAGCTAGGCAAATGGGGTTCAAGGATAGGAGAATCGGTCCTGATATATGTAGATTGGCTTCTGAATACATAAGCAAATATGAGGGGTTTGAAGATGATATATATGCCTATTTTGAGAATGAACCAGATGCTGATTCACTTTATGTCAAGTTGGTGGAAGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTTCACTGGAACCATTGTGACATATTGATAAGTCAGGTTTTGAGCTCGGACATTTCTGAGCCAAAAAAGAAGCTAAAGAACATAGTTATGGCTGCTACTAGGGATCAAAGGTTCGAGAGAGTTGCCAAGAGTCTGAAGGTGGCTAGTGTTTTTAATACATTAGTGGAAGAGATGAAAGCGATGGGTATTGCAGTAAACGATGACTCTCAATGTACAGAGGTAATGGCTCCTGTAGCTCACAGTGATAGGAGCCCGGTCCTTCTTCTAATGGGGGGAGGTATGGGAGCTGGCAAGAGCACTGTACTCAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCATCAGGAAATGCCGTAGTCATTGAAGCAGATGCCTTCAAAGAATCAGATGTCATCTACAGGGCACTTCGCTCAACAGGTCATCATGACATGATTCGAACAGCCGAATTGGTACACCAATCATCCACAGATGCAGCATCATCCCTCTTGGTAACAGCACTAAACGAGGGTCGTGACGTAATTATGGATGGCACACTCTCCTGGGTTCCGTTTGTTGTGCAGACAATAACAATGGCTAGAAATGTCCACCGCCGCCGTTATCGCATGGGAGTTGGCTACAGAGTCAACAAAGACAGAACCGTAACTGAAAACTATTGGGAACGAATTGAAGATGAAGAACCTGAACAAATTGGAGGAAAAAAGAGAAAACCATATAGGATTGAGCTTGTTGGAGTAGTGTGTGATGTTTACCTTGCTGTTGTTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCTGTGAGAATAAAATCGCAATTGAAATCCCACAAGAGATTTGCTGACGCATTTATGACATACTGTCAATTAGTAGACAATGCCCGTCTATACTGCACAAATGCATTGGAAGGCCCGGCCAAGTTGATAGGATGGAAAGATAGAGACAGAACCTTGCTAGTTGATCCAGATGAAATTGACTGTTTGAAGAGGGTTGCAAAGTTAAATGAAGATGCCAACTCCATATATGAACTATACAAACAACCCAACCCAGCTTGTGAAGCTGGATCCGTATGGAAAGACATTGTATTATCTCCTTCAAGGTTGAACATCCAACAAGAGCTCAAATTTTCAATCCAAGAAATTGAGCGCTTGAAATGCGAACTTCAATGA 1551 0.4191 MDDIQTDNDAKPSFTQILVISSIGLIFFIALRYHLKKIRDQKIIPRLRLSRAGHPPKLERFSHYVARQMGFKDRRIGPDICRLASEYISKYEGFEDDIYAYFENEPDADSLYVKLVEEFERCILSYFGFHWNHCDILISQVLSSDISEPKKKLKNIVMAATRDQRFERVAKSLKVASVFNTLVEEMKAMGIAVNDDSQCTEVMAPVAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDVIYRALRSTGHHDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRRRYRMGVGYRVNKDRTVTENYWERIEDEEPEQIGGKKRKPYRIELVGVVCDVYLAVVRGIRRAIMCRRAVRIKSQLKSHKRFADAFMTYCQLVDNARLYCTNALEGPAKLIGWKDRDRTLLVDPDEIDCLKRVAKLNEDANSIYELYKQPNPACEAGSVWKDIVLSPSRLNIQQELKFSIQEIERLKCELQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02647 516 Gene3D - 196 434 IPR027417 -
Vifa5g02647 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 330 IPR027417 -
Vifa5g02647 516 Coils Coil 494 516 - -
Vifa5g02647 516 Pfam Zeta toxin 207 321 IPR010488 GO:0005524|GO:0016301
Vifa5g02647 516 PANTHER UNCHARACTERIZED 6 513 IPR044802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02647 Vifa-Chr5 880707154 880710084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02647 - - gmx:100794775 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02647 5 880707154 880710084 Vifa5g02647 5 880707154 880710084 ECH
Vifa5g02647 5 880707154 880710084 Vifa3g01356 3 348950752 348953682 PCT