Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01356 ATGCAGAAAGAGTATAGTGTCACACAGATCATGGTGGCCTCTTCCATTGGGTTGATAATTGCTGCAGCAATGCATTATCGCCTAAAAAAGTTTCGAGATCGAAAGATCATTCCGCGTTTGAGATATTCAAAGGCAGGCCAAACTCCAAAGCTTGAGAGATTCTCTCATTACGTAGCTAGACAAATGGGGATCAAAGATAAAAGGAACTGTCCTAATTTATGTAAATTGGCTTCTGAATACATCAGAAAATCTGATGGATGTGAAGATGATATTTATGCTTTCTTTGAAAATGAACAAAATGCTGATTCACTTTTTGTTAAGCTTGTCGAGGAGTTTGAGAGATGTATTCTTAGTTACTTTGCATTCCATTGGAGCCTTGGTGATTTATTGATAAGTCAGGTTTTGAGCTCTGACACTGAGCCAAAAAAGAAGTTCAAACACATAGTTATGGCAGCAACTAGGGATCAAAGGGTTGAAAGGGTAACAAAGAATTTGAAGGTGGCTAGAGTTTTCAACACACTAGTAGAAGAAATGAGAGCAATGGGACTTGTATCGAATGATGACAATCGATGCACCGAGGTTATGGCTCCAGTGGCTCACAGTGATAGGAGTCCTGTCCTTCTTTTCATGGGTGGTGGTATGGGAGCTGGAAAGAGCACTGTCCTTAAAGACATTCTTAAAGAACCTTTTTGGGTAGGAGCAGCTAGCAATGCTGTTATCATTGAAGCAGATGCATTCAAAGAATCAGATGTTATCTATAAGGCCCTTAGTTCAAGAGGTCATCATGACATGATTCGAATGGCTGAATTGGTACACCAATCGTCAACAGATGCAGCCTCATCGCTCCTGGTAACGGCGTTGAATGAAGGAAGAGATGTGATTATGGATGGAACATTCTCTTGGGTGCCATTTGTTGTGCAAACGATAACAATGGCTAGGAATGTCCACCGTCGTCGTTACCGTATGGGAGCTGGTTACAAAGTGAATGATGATGGAACTACAACAGAGAGCTATTGGGAAAGAATTGAAAATGAAGAACCTGAACACATTGGTGGCAAAAAGAGAAAACCATATAGGATAGAGCTTGTTGGAGTAGTATGTGATGCTTACCTTGCTGTTATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTGAAATCACAATTGAAATCACACAAGAGATTTGCAGATGCATTTATGACTTATTGTCAACTAGTAGATAATGCAAGGCTATACAGCACAAATGCTTTAGAAGGCCCACCCAAATTGATAGGATGGAAAGACAGAGACAAGACATTGCTAGTTGATCCCGATGAAATTGATTGTTTGAAGAGAGTTGCTAGGTTGAACGAAGATGCTGATTCTATATATGAACTTTACAAGCACCCTAACCCAACATGTGAAGCAGGATCTATATGGAAAGACATTGTGTTATCTCCTTCAAGGTTGAACATTCAACAGGAGCTCAAGTATTCAATTCACAAGGTTGAGAGATTTTCAGTCCAGAATGCTCCCTTAATGTTGGAGCAGTGA 1545 0.4026 MQKEYSVTQIMVASSIGLIIAAAMHYRLKKFRDRKIIPRLRYSKAGQTPKLERFSHYVARQMGIKDKRNCPNLCKLASEYIRKSDGCEDDIYAFFENEQNADSLFVKLVEEFERCILSYFAFHWSLGDLLISQVLSSDTEPKKKFKHIVMAATRDQRVERVTKNLKVARVFNTLVEEMRAMGLVSNDDNRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWVGAASNAVIIEADAFKESDVIYKALSSRGHHDMIRMAELVHQSSTDAASSLLVTALNEGRDVIMDGTFSWVPFVVQTITMARNVHRRRYRMGAGYKVNDDGTTTESYWERIENEEPEHIGGKKRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLKSHKRFADAFMTYCQLVDNARLYSTNALEGPPKLIGWKDRDKTLLVDPDEIDCLKRVARLNEDADSIYELYKHPNPTCEAGSIWKDIVLSPSRLNIQQELKYSIHKVERFSVQNAPLMLEQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01356 514 PANTHER UNCHARACTERIZED 3 507 IPR044802 -
Vifa3g01356 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 338 IPR027417 -
Vifa3g01356 514 Gene3D - 187 426 IPR027417 -
Vifa3g01356 514 Pfam Zeta toxin 199 349 IPR010488 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01356 Vifa-Chr3 348950752 348953682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01356 - - aip:107634095 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01356 3 348950752 348953682 Vifa3g01356 3 348950752 348953682 ECH
Vifa5g02647 5 880707154 880710084 Vifa3g01356 3 348950752 348953682 PCT