Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02623 ATGTGGTTCTTATTAAACCCTCCTGGGAAAGCTGCCGTCCACATACAGAACATAGACAATTTTGATTGGTTGTCCAAGTACAATACATTCAAGAAACAAAATGCCAGCGATCCGAGATATACTTCTGAATTGAACTACCTCCGTTTCTACCTGCCAGATGTCTTCCCCACTCTAAATAAGATTTTGCTGTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGCACGCTATGGAATATTAACATGAATGAAAAAGTAATAGCAGGAGTTGGGACTTGCCAGGAAGGTGAAACTTCATTTCGCAGGATGGATATGTTCATAAACTTCTCAAATCCATACATTGCAAAGAGGTTTGATGTCAATGCTTGTACATGGGCGTTCGGGATGAACTTGTTTGATTTGCAGCAGTGGAGGAGGCATAATTTAACTGGTGTCTATCACAATTATTTGCAAAAGGGTTCCAACATGCGATTGTTTAGCACGGGCAGTCTGCCAATAGGCTGGCTCACCTTCTATAACAAAATTATGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTTGGACATTGACACAAATAAGATTGAACAGGCTGCTGTTATACACTTTGATGGGATTAGGAAGCCATGGATGGACATTGGTTTGGCAAGATACAAGAGTTATTGGTCCAAATTTATCAATTTTGACCTCCCTCTTTTGCAACGTTGCAATATCCAGGCGTAG 732 0.4126 MWFLLNPPGKAAVHIQNIDNFDWLSKYNTFKKQNASDPRYTSELNYLRFYLPDVFPTLNKILLFDHDVVVQQDLSTLWNINMNEKVIAGVGTCQEGETSFRRMDMFINFSNPYIAKRFDVNACTWAFGMNLFDLQQWRRHNLTGVYHNYLQKGSNMRLFSTGSLPIGWLTFYNKIMVLDRRWHILGLGYDLDIDTNKIEQAAVIHFDGIRKPWMDIGLARYKSYWSKFINFDLPLLQRCNIQA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02623 243 Pfam Glycosyl transferase family 8 1 216 IPR002495 GO:0016757
Vifa5g02623 243 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 5 232 IPR029044 -
Vifa5g02623 243 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 241 IPR029044 -
Vifa5g02623 243 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 31 241 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02623 Vifa-Chr5 874184382 874185612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02623 1 243 Glycosyltransferase AT1G06780 54.694 5.58e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02623 K13648 - gmx:100811619 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02623 5 874184382 874185612 Vifa3g01371 3 353072845 353076323 PCT